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Phylogenetic reconciliation seeks to explain host-symbiont co-evolution by mapping parasite trees onto host trees through events such as cospeciation, duplication, host switching, and loss. Finding an optimal reconciliation that ensures…

Populations and Evolution · Quantitative Biology 2026-02-02 Cyriac Antony , Alessio Martino , Blerina Sinaimeri

We study spectral algorithms for the high-dimensional Nearest Neighbor Search problem (NNS). In particular, we consider a semi-random setting where a dataset $P$ in $\mathbb{R}^d$ is chosen arbitrarily from an unknown subspace of low…

Data Structures and Algorithms · Computer Science 2014-08-05 Amirali Abdullah , Alexandr Andoni , Ravindran Kannan , Robert Krauthgamer

Perhaps the most straightforward classifier in the arsenal or machine learning techniques is the Nearest Neighbour Classifier -- classification is achieved by identifying the nearest neighbours to a query example and using those neighbours…

Machine Learning · Computer Science 2021-08-10 Padraig Cunningham , Sarah Jane Delany

We consider the neighborhood tree induced by alternating the use of different neighborhood structures within a local search descent. We investigate the issue of designing a search strategy operating at the neighborhood tree level by…

Other Computer Science · Computer Science 2013-01-01 Houda Derbel , Bilel Derbel

Research in reinforcement learning has produced algorithms for optimal decision making under uncertainty that fall within two main types. The first employs a Bayesian framework, where optimality improves with increased computational time.…

Machine Learning · Statistics 2011-09-22 Christos Dimitrakakis

We propose a novel application of coded computing to the problem of the nearest neighbor estimation using MatDot Codes [Fahim. et.al. 2017], that are known to be optimal for matrix multiplication in terms of recovery threshold under storage…

Information Theory · Computer Science 2018-11-30 Utsav Sheth , Sanghamitra Dutta , Malhar Chaudhari , Haewon Jeong , Yaoqing Yang , Jukka Kohonen , Teemu Roos , Pulkit Grover

Recently, there has been significant interest in the study of the community search problem in social and information networks: given one or more query nodes, find densely connected communities containing the query nodes. However, most…

Social and Information Networks · Computer Science 2015-09-15 Xin Huang , Laks V. S. Lakshmanan , Jeffrey Xu Yu , Hong Cheng

An ultrametric space or infinity-metric space is defined by a dissimilarity function that satisfies a strong triangle inequality in which every side of a triangle is not larger than the larger of the other two. We show that search in…

Information Retrieval · Computer Science 2026-02-10 Antonio Pariente , Ignacio Hounie , Santiago Segarra , Alejandro Ribeiro

We study the fundamental problem of finding the best string to represent a given set, in the form of the Closest String problem: Given a set $X \subseteq \Sigma^d$ of $n$ strings, find the string $x^*$ minimizing the radius of the smallest…

Computational Complexity · Computer Science 2023-05-30 Amir Abboud , Nick Fischer , Elazar Goldenberg , Karthik C. S. , Ron Safier

Nearest Neighbors Algorithm is a Lazy Learning Algorithm, in which the algorithm tries to approximate the predictions with the help of similar existing vectors in the training dataset. The predictions made by the K-Nearest Neighbors…

Machine Learning · Computer Science 2018-11-14 Chandrasekaran Anirudh Bhardwaj , Megha Mishra , Kalyani Desikan

Suppose a target is hidden in one of the vertices of an edge-weighted graph according to a known probability distribution. The expanding search problem asks for a search sequence of the vertices so as to minimize the expected time for…

Discrete Mathematics · Computer Science 2019-11-21 Ben Hermans , Roel Leus , Jannik Matuschke

There has been a lot of recent work on Bayesian methods for reinforcement learning exhibiting near-optimal online performance. The main obstacle facing such methods is that in most problems of interest, the optimal solution involves…

Machine Learning · Computer Science 2009-12-31 Christos Dimitrakakis

Binary search trees (BSTs) are one of the most basic and widely used data structures. The best static tree for serving a sequence of queries (searches) can be computed by dynamic programming. In contrast, when the BSTs are allowed to be…

Data Structures and Algorithms · Computer Science 2023-03-07 Yaniv Sadeh , Haim Kaplan

Similarity search is a core component in various applications such as image matching, product recommendation and low-shot classification. However, single machine solutions are usually insufficient due to the large cardinality of modern…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-26 Shiyuan Deng , Xiao Yan , Kelvin K. W. Ng , Chenyu Jiang , James Cheng

In this paper, we consider the problem of classification of $M$ high dimensional queries $y^1,\cdots,y^M\in B^S$ to $N$ high dimensional classes $x^1,\cdots,x^N\in A^S$ where $A$ and $B$ are discrete alphabets and the probabilistic model…

Machine Learning · Computer Science 2020-06-24 Arash Gholami Davoodi , Sean Chang , Hyun Gon Yoo , Anubhav Baweja , Mihir Mongia , Hosein Mohimani

Partitioning trees are efficient data structures for $k$-nearest neighbor search. Machine learning libraries commonly use a special type of partitioning trees called $k$d-trees to perform $k$-nn search. Unfortunately, $k$d-trees can be…

Machine Learning · Computer Science 2023-02-28 Mashaan Alshammari , John Stavrakakis , Adel F. Ahmed , Masahiro Takatsuka

We show that a large fraction of the data-structure lower bounds known today in fact follow by reduction from the communication complexity of lopsided (asymmetric) set disjointness. This includes lower bounds for: * high-dimensional…

Data Structures and Algorithms · Computer Science 2010-10-20 Mihai Patrascu

A classic data structure problem is to preprocess a string T of length $n$ so that, given a query $q$, we can quickly find all substrings of T with Hamming distance at most $k$ from the query string. Variants of this problem have seen…

Data Structures and Algorithms · Computer Science 2026-04-03 Jackson Bibbens , Levi Borevitz , Samuel McCauley

Computing bounded depth decompositions is a bottleneck in many applications of the treedepth parameter. The fastest known algorithm, which is due to Reidl, Rossmanith, S\'{a}nchez Villaamil, and Sikdar [ICALP 2014], runs in…

Data Structures and Algorithms · Computer Science 2025-02-25 Lars Jaffke , Paloma T. de Lima , Wojciech Nadara , Emmanuel Sam

Top-k Nearest Neighbors (kNN) problem on road network has numerous applications on location-based services. As direct search using the Dijkstra's algorithm results in a large search space, a plethora of complex-index-based approaches have…

Databases · Computer Science 2024-08-13 Yiqi Wang , Long Yuan , Wenjie Zhang , Xuemin Lin , Zi Chen , Qing Liu
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