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We introduce SIRI, Scaling Iterative Reinforcement Learning with Interleaved Compression, a simple yet effective RL approach for Large Reasoning Models (LRMs) that enables more efficient and accurate reasoning. Existing studies have…

Machine Learning · Computer Science 2025-09-30 Haoming Wen , Yushi Bai , Juanzi Li , Jie Tang

Drug-target interaction (DTI) prediction plays a very important role in drug development and drug discovery. Biochemical experiments or \textit{in vitro} methods are very expensive, laborious and time-consuming. Therefore, \textit{in…

Machine Learning · Computer Science 2018-05-04 Ratha Pech , Dong Hao , Yan-Li Lee , Maryna Po , Tao Zhou

In the last years decision-focused learning framework, also known as predict-and-optimize, have received increasing attention. In this setting, the predictions of a machine learning model are used as estimated cost coefficients in the…

Machine Learning · Computer Science 2022-06-20 Jayanta Mandi , Víctor Bucarey , Maxime Mulamba , Tias Guns

In a previous paper we proposed a Projected Configuration Interaction method that uses sets of axially deformed single particle states to build up the many body basis. We show that the choice of the basis set is essential for the efficiency…

Nuclear Theory · Physics 2013-05-29 Zao-Chun Gao , Mihai Horoi , Y. S. Chen

When dealing with real-world optimization problems, decision-makers usually face high levels of uncertainty associated with partial information, unknown parameters, or complex relationships between these and the problem decision variables.…

Optimization and Control · Mathematics 2023-05-01 Antonio Alcántara , Carlos Ruiz

Click-through rate (CTR) prediction is a critical task in recommendation systems, serving as the ultimate filtering step to sort items for a user. Most recent cutting-edge methods primarily focus on investigating complex implicit and…

Information Retrieval · Computer Science 2024-05-13 Song-Li Wu , Liang Du , Jia-Qi Yang , Yu-Ai Wang , De-Chuan Zhan , Shuang Zhao , Zi-Xun Sun

Learning to rank (LTR) plays a crucial role in various Information Retrieval (IR) tasks. Although supervised LTR methods based on fine-grained relevance labels (e.g., document-level annotations) have achieved significant success, their…

Information Retrieval · Computer Science 2025-08-21 Yiteng Tu , Zhichao Xu , Tao Yang , Weihang Su , Yujia Zhou , Yiqun Liu , Fen Lin , Qin Liu , Qingyao Ai

The structure of proteins is the basis for studying protein function and drug design. The emergence of AlphaFold 2 has greatly promoted the prediction of protein 3D structures, and it is of great significance to give an overall and accurate…

Biomolecules · Quantitative Biology 2024-07-02 Wenda Wang , Jiaqi Zhai , He Huang , Xinqi Gong

Reservoir computing (RC) is a state-of-the-art machine learning method that makes use of the power of dynamical systems (the reservoir) for real-time inference. When using biological complex systems as reservoir substrates, it serves as a…

Adaptation and Self-Organizing Systems · Physics 2026-03-03 Mario U. Gaimann , Miriam Klopotek

Model merging has shown that multitask models can be created by directly combining the parameters of different models that are each specialized on tasks of interest. However, models trained independently on distinct tasks often exhibit…

Machine Learning · Computer Science 2026-03-17 Pratik Ramesh , George Stoica , Arun Iyer , Leshem Choshen , Judy Hoffman

Measurements acquired from distributed physical systems are often sparse and noisy. Therefore, signal processing and system identification tools are required to mitigate noise effects and reconstruct unobserved dynamics from limited sensor…

Machine Learning · Computer Science 2025-09-08 Omid Sedehi , Manish Yadav , Merten Stender , Sebastian Oberst

Large Language Models (LLMs) have emerged as a promising paradigm for next-generation recommender systems, offering strong semantic understanding and natural-language reasoning abilities. Despite recent progress, current LLM-based…

Information Retrieval · Computer Science 2026-05-11 Shijun Li , Wooseong Yang , Yu Wang , Tianxin Wei , Joydeep Ghosh

In order for the predicted interactions to be directly adopted by biologists, the ma- chine learning predictions have to be of high precision, regardless of recall. This aspect cannot be evaluated or numerically represented well by…

Machine Learning · Computer Science 2015-11-09 Haohan Wang , Madhavi K. Ganapathiraju

Determining the appropriate rank in Non-negative Matrix Factorization (NMF) is a critical challenge that often requires extensive parameter tuning and domain-specific knowledge. Traditional methods for rank determination focus on…

Machine Learning · Computer Science 2024-10-22 Marc A. Tunnell , Zachary J. DeBruine , Erin Carrier

Retrieval-Augmented Generation (RAG) addresses large language model (LLM) hallucinations by grounding responses in external knowledge, but its effectiveness is compromised by poor-quality retrieved contexts containing irrelevant or noisy…

Computation and Language · Computer Science 2025-10-27 Jiale Deng , Yanyan Shen , Ziyuan Pei , Youmin Chen , Linpeng Huang

The recently developed Doubles Connected Moments (DCM) expansion offers a tractable approach for computing correlation energy, exhibiting an noniterative O(N^6) scaling with system size N. Benchmark calculations on a set of molecules…

Chemical Physics · Physics 2026-05-12 Chongxiao Zhao , Wenjie Dou

In recent years, machine learning techniques have been explored to support, enhance or augment wireless systems especially at the physical layer of the protocol stack. Traditional ML based approach or optimization is often not suitable due…

Signal Processing · Electrical Eng. & Systems 2019-02-13 Nikhil Gulati , Rohit Bahl , Kapil R. Dandekar

An implementation of stochastic resolution of identity (sRI) approximation to CC2 oscillator strengths as well as ground state analytical gradients is presented. The essential 4-index electron repulsion integrals (ERIs) are contracted with…

Chemical Physics · Physics 2025-03-17 Chongxiao Zhao , Qi Ou , Chenyang Li , Wenjie Dou

The prediction of protein interactions (CPIs) is crucial for the in-silico screening step in drug discovery. Recently, many end-to-end representation learning methods using deep neural networks have achieved significantly better performance…

Quantitative Methods · Quantitative Biology 2020-11-30 Jingtao Wang , Xi Li , Hua Zhang

The Configuration Interaction (CI) method is applied to the calculation of the structures of a number of positron binding systems, including e+Be, e+Mg, e+Ca and e+Sr. These calculations were carried out in orbital spaces containing about…

Atomic Physics · Physics 2007-05-23 M. W. J. Bromley , J. Mitroy
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