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Protein representation learning aims to learn informative protein embeddings capable of addressing crucial biological questions, such as protein function prediction. Although sequence-based transformer models have shown promising results by…

Quantitative Methods · Quantitative Biology 2024-10-22 Michail Chatzianastasis , Yang Zhang , George Dasoulas , Michalis Vazirgiannis

In graph representation learning, it is important that the complex geometric structure of the input graph, e.g. hidden relations among nodes, is well captured in embedding space. However, standard Euclidean embedding spaces have a limited…

Machine Learning · Computer Science 2023-07-11 Tuc Nguyen-Van , Dung D. Le , The-Anh Ta

Ensemble learning is a classical learning method utilizing a group of weak learners to form a strong learner, which aims to increase the accuracy of the model. Recently, brain-inspired hyperdimensional computing (HDC) becomes an emerging…

Neural and Evolutionary Computing · Computer Science 2022-03-28 Ruixuan Wang , Dongning Ma , Xun Jiao

Hyperdimensional computing (HDC) offers lightweight learning for energy-constrained devices by encoding data into high-dimensional vectors. However, its reliance on ultra-high dimensionality and static, randomly initialized hypervectors…

Machine Learning · Computer Science 2026-02-03 Hanne Dejonghe , Sam Leroux

Hyperdimensional computing (HDC) has emerged as a new light-weight learning algorithm with smaller computation and energy requirements compared to conventional techniques. In HDC, data points are represented by high-dimensional vectors…

Machine Learning · Computer Science 2021-03-12 Toygun Basaklar , Yigit Tuncel , Shruti Yadav Narayana , Suat Gumussoy , Umit Y. Ogras

Existing deep learning approaches for image super-resolution, particularly those based on CNNs and attention mechanisms, often suffer from structural inflexibility. Although graph-based methods offer greater representational adaptability,…

Computer Vision and Pattern Recognition · Computer Science 2025-10-09 Qiongyang Hu , Wenyang Liu , Wenbin Zou , Yuejiao Su , Lap-Pui Chau , Yi Wang

Hyperdimensional Computing (HDC) is a computation framework based on properties of high-dimensional random spaces. It is particularly useful for machine learning in resource-constrained environments, such as embedded systems and IoT, as it…

Machine Learning · Computer Science 2022-05-18 Igor Nunes , Mike Heddes , Tony Givargis , Alexandru Nicolau

Recent research has shown that alignment between the structure of graph data and the geometry of an embedding space is crucial for learning high-quality representations of the data. The uniform geometry of Euclidean and hyperbolic spaces…

Machine Learning · Computer Science 2023-06-27 Wei Zhao , Federico Lopez , J. Maxwell Riestenberg , Michael Strube , Diaaeldin Taha , Steve Trettel

Learning effective protein representations is critical in a variety of tasks in biology such as predicting protein function or structure. Existing approaches usually pretrain protein language models on a large number of unlabeled amino acid…

Machine Learning · Computer Science 2023-01-31 Zuobai Zhang , Minghao Xu , Arian Jamasb , Vijil Chenthamarakshan , Aurelie Lozano , Payel Das , Jian Tang

Hyperdimensional Computing (HDC) is a bio-inspired computing framework that has gained increasing attention, especially as a more efficient approach to machine learning (ML). This work introduces the \name{} compiler, the first open-source…

Machine Learning · Computer Science 2023-04-26 Pere Vergés , Mike Heddes , Igor Nunes , Tony Givargis , Alexandru Nicolau

Joint-Embedding Predictive Architectures (JEPAs) have recently emerged as a novel and powerful technique for self-supervised representation learning. They aim to learn an energy-based model by predicting the latent representation of a…

Machine Learning · Computer Science 2025-01-22 Geri Skenderi , Hang Li , Jiliang Tang , Marco Cristani

Experimental determination of protein function is resource-consuming. As an alternative, computational prediction of protein function has received attention. In this context, protein structural classification (PSC) can help, by allowing for…

Molecular Networks · Quantitative Biology 2020-03-17 Khalique Newaz , Mahboobeh Ghalehnovi , Arash Rahnama , Panos J. Antsaklis , Tijana Milenkovic

Hypergraphs have been becoming a popular choice to model complex, non-pairwise, and higher-order interactions for recommender system. However, compared with traditional graph-based methods, the constructed hypergraphs are usually much…

Social and Information Networks · Computer Science 2021-08-19 Yicong Li , Hongxu Chen , Xiangguo Sun , Zhenchao Sun , Lin Li , Lizhen Cui , Philip S. Yu , Guandong Xu

Hyperdimensional computing (HDC), utilizing a parallel computing paradigm and efficient learning algorithm, is well-suited for resource-constrained artificial intelligence (AI) applications, such as in edge devices. In-memory computing…

Emerging Technologies · Computer Science 2025-12-25 Yi Huang , Alireza Jaberi Rad , Qiangfei Xia

Many material response functions depend strongly on microstructure, such as inhomogeneities in phase or orientation. Homogenization presents the task of predicting the mean response of a sample of the microstructure to external loading for…

Machine Learning · Computer Science 2022-10-04 Reese Jones , Cosmin Safta , Ari Frankel

Hyperdimensional (HD) computing offers an attractive alternative to deep networks for edge learning due to its simplicity, fast prototype-based inference, and compatibility with online updates. However, standard pixel-based HD encoders are…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Arpan Kusari

Kernels on discrete structures evaluate pairwise similarities between objects which capture semantics and inherent topology information. Existing kernels on discrete structures are only developed by topology information(such as adjacency…

Machine Learning · Computer Science 2022-11-01 Fuyang Li , Jiying Zhang , Xi Xiao , Bin Zhang , Dijun Luo

Hyperdimensional computing (HDC) is a brain-inspired paradigm valued for its noise robustness, parallelism, energy efficiency, and low computational overhead. Hardware accelerators are being explored to further enhance their performance,…

Emerging Technologies · Computer Science 2025-04-29 Md Mizanur Rahaman Nayan , Che-Kai Liu , Zishen Wan , Arijit Raychowdhury , Azad J Naeemi

The increasing prevalence of large-scale hypergraphs poses significant computational challenges for hypergraph neural network (HNN) training. To address this, hypergraph condensation (HGC) distills large real hypergraphs into compact yet…

Machine Learning · Computer Science 2026-05-12 Fan Li , Xiaoyang Wang , Chen Chen , Wenjie Zhang

Graph machine learning, particularly using graph neural networks, heavily relies on node features. However, many real-world systems, such as social and biological networks, lack node features due to privacy concerns, incomplete data, or…

Machine Learning · Computer Science 2025-06-10 Anwar Said , Waseem Abbas , Xenofon Koutsoukos