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The combination of new recording techniques in neuroscience and powerful inference methods recently held the promise to recover useful effective models, at the single neuron or network level, directly from observed data. The value of a…

Neurons and Cognition · Quantitative Biology 2018-04-09 Cristiano Capone , Guido Gigante , Paolo Del Giudice

Multivariate bounded discrete data arises in many fields. In the setting of dementia studies, such data is collected when individuals complete neuropsychological tests. We outline a modeling and inference procedure that can model the joint…

Methodology · Statistics 2026-02-10 Daniel Suen , Yen-Chi Chen

How can we analyze enormous networks including the Web and social networks which have hundreds of billions of nodes and edges? Network analyses have been conducted by various graph mining methods including shortest path computation,…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-27 Chiwan Park , Ha-Myung Park , Minji Yoon , U Kang

Machine learning and data processing techniques relying on covariance information are widespread as they identify meaningful patterns in unsupervised and unlabeled settings. As a prominent example, Principal Component Analysis (PCA)…

Machine Learning · Computer Science 2025-12-04 Andrea Cavallo , Ayushman Raghuvanshi , Sundeep Prabhakar Chepuri , Elvin Isufi

This paper investigates data-driven solutions and parameter discovery to (2+1)-dimensional coupled nonlinear Schr\"odinger equations with variable coefficients (VC-CNLSEs), which describe transverse effects in optical fiber systems under…

Optics · Physics 2025-08-21 Hamid Momeni , AllahBakhsh Yazdani Cherati , Ali Valinejad

Reinforcement learning with verifiable rewards (RLVR) has significantly improved reasoning in large language models (LLMs), yet the token-level mechanisms underlying these improvements remain unclear. We present a systematic empirical study…

Computation and Language · Computer Science 2026-03-25 Haoming Meng , Kexin Huang , Shaohang Wei , Chiyu Ma , Shuo Yang , Xue Wang , Guoyin Wang , Bolin Ding , Jingren Zhou

Parallel recordings of neural spike counts have revealed the existence of context-dependent noise correlations in neural populations. Theories of population coding have also shown that such correlations can impact the information encoded by…

Machine Learning · Computer Science 2025-07-30 Sacha Sokoloski , Ruben Coen-Cagli

The neural activity in the visual processing is influenced by both external stimuli and internal brain states. Ideally, a neural predictive model should account for both of them. Currently, there are no dynamic encoding models that…

Neurons and Cognition · Quantitative Biology 2025-11-18 Finn Schmidt , Polina Turishcheva , Suhas Shrinivasan , Fabian H. Sinz

Weighted networks encode not only the presence of interactions but also their strength. Existing methods for weighted network community detection often rely on Poisson models, which can be restrictive for overdispersed data and make…

Methodology · Statistics 2026-04-28 Fumiya Iwashige

Von Economo neurons (VENs) are selectively lost in behavioural-variant frontotemporal dementia (bvFTD) and reduced in autism spectrum conditions (ASC), yet their computational role in social learning remains unexplained. We train a spiking…

Neurons and Cognition · Quantitative Biology 2026-05-19 Esila Keskin

Neural responses are highly variable, and some portion of this variability arises from fluctuations in modulatory factors that alter their gain, such as adaptation, attention, arousal, expected or actual reward, emotion, and local metabolic…

Neurons and Cognition · Quantitative Biology 2015-07-08 Neil C. Rabinowitz , Robbe L. T. Goris , Johannes Ballé , Eero P. Simoncelli

Deep neural networks (DNN) have been used successfully in many scientific problems for their high prediction accuracy, but their application to genetic studies remains challenging due to their poor interpretability. In this paper, we…

Machine Learning · Computer Science 2021-10-01 Peyman H. Kassani , Fred Lu , Yann Le Guen , Zihuai He

Vision-Language Models (VLMs) excel across diverse tasks but suffer from high inference costs in time and memory. Token sparsity mitigates inefficiencies in token usage, while neuron sparsity reduces high-dimensional computations, both…

Machine Learning · Computer Science 2025-05-27 Qinsi Wang , Hancheng Ye , Ming-Yu Chung , Yudong Liu , Yueqian Lin , Martin Kuo , Mingyuan Ma , Jianyi Zhang , Yiran Chen

Raven's Progressive Matrices (RPM) have been widely used for Intelligence Quotient (IQ) test of humans. In this paper, we aim to solve RPM with neural networks in both supervised and unsupervised manners. First, we investigate strategies to…

Computer Vision and Pattern Recognition · Computer Science 2020-02-07 Tao Zhuo , Mohan Kankanhalli

Replicated network data are increasingly available in many research fields. In connectomic applications, inter-connections among brain regions are collected for each patient under study, motivating statistical models which can flexibly…

Methodology · Statistics 2018-09-11 Daniele Durante , David B. Dunson , Joshua T. Vogelstein

Modeling data with multivariate count responses is a challenging problem due to the discrete nature of the responses. Existing methods for univariate count responses cannot be easily extended to the multivariate case since the dependency…

Methodology · Statistics 2016-08-15 Hao Wu , Xinwei Deng , Naren Ramakrishnan

Tensor-valued data are being encountered increasingly more commonly, in the biological, natural as well as the social sciences. The learning of the unknown model parameter vector given such data, involves covariance modelling of such data,…

Applications · Statistics 2015-06-19 Kangrui Wang , Dalia Chakrabarty

Hidden Markov models provide a natural statistical framework for the detection of the copy number variations (CNV) in genomics. In this paper, we consider a Hidden Markov Model involving several correlated hidden processes at the same time.…

Methodology · Statistics 2017-06-22 Xiaoqiang Wang , Emilie Lebarbier , Julie Aubert , Stéphane Robin

Data-driven deep learning provides efficient algorithms for parameter identification of epidemiology models. Unlike the constant parameters, the complexity of identifying time-varying parameters is largely increased. In this paper, a…

Dynamical Systems · Mathematics 2021-03-19 Jie Long , Abdul Khaliq , Khaled Furati

Focusing on regression based analysis of extremes in a presence of systematically missing covariates, this work presents a data-driven spatio-temporal regression based clustering of threshold excesses. It is shown that in a presence of…

Methodology · Statistics 2021-04-02 Olga Kaiser , Dimitri Igdalov , Olivia Martius , Illia Horenko
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