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We consider the problem of inferring a graphical Potts model on a population of variables, with a non-uniform number of Potts colors (symbols) across variables. This inverse Potts problem generally involves the inference of a large number…

Potts statistical models have become a popular and promising way to analyze mutational covariation in protein Multiple Sequence Alignments (MSAs) in order to understand protein structure, function and fitness. But the statistical…

Quantitative Methods · Quantitative Biology 2019-03-13 Allan Haldane , Ronald M. Levy

Combinatorial optimization problems can be mapped onto Ising models, and their ground state is generally difficult to find. A lot of heuristics for these problems have been proposed, and one promising approach is to use continuous…

Statistical Mechanics · Physics 2022-11-03 Shintaro Sato

In-memory computing (IMC) has been shown to be a promising approach for solving binary optimization problems while significantly reducing energy and latency. Building on the advantages of parallel computation, we propose an IMC-compatible…

Interpretable reinforcement learning policies are essential for high-stakes decision-making, yet optimizing decision tree policies in Markov Decision Processes (MDPs) remains challenging. We propose SPOT, a novel method for computing…

Machine Learning · Computer Science 2025-10-23 Xuyuan Xiong , Pedro Chumpitaz-Flores , Kaixun Hua , Cheng Hua

The sound identification of refactoring opportunities is still an open problem in software engineering. Recent studies have shown the effectiveness of machine learning models in recommending methods that should undergo different refactoring…

Software Engineering · Computer Science 2021-07-23 David van der Leij , Jasper Binda , Robbert van Dalen , Pieter Vallen , Yaping Luo , Maurício Aniche

Modern Machine Learning (ML) training on large-scale datasets is a very time-consuming workload. It relies on the optimization algorithm Stochastic Gradient Descent (SGD) due to its effectiveness, simplicity, and generalization performance.…

Hardware Architecture · Computer Science 2024-09-30 Steve Rhyner , Haocong Luo , Juan Gómez-Luna , Mohammad Sadrosadati , Jiawei Jiang , Ataberk Olgun , Harshita Gupta , Ce Zhang , Onur Mutlu

Most exact algorithms for general partially observable Markov decision processes (POMDPs) use a form of dynamic programming in which a piecewise-linear and convex representation of one value function is transformed into another. We examine…

Artificial Intelligence · Computer Science 2013-02-08 Anthony R. Cassandra , Michael L. Littman , Nevin Lianwen Zhang

Phase transitions are a central theme of statistical mechanics, and of probability more generally. Lattice spin models represent a general paradigm for phase transitions in finite dimensions, describing ferromagnets and even some fluids…

Probability · Mathematics 2017-07-04 Hugo Duminil-Copin

Program of Thoughts (PoT) is an approach characterized by its executable intermediate steps, which ensure the accuracy of the logical calculations in the reasoning process. Currently, PoT primarily uses Python. However, relying solely on a…

Computation and Language · Computer Science 2024-11-19 Xianzhen Luo , Qingfu Zhu , Zhiming Zhang , Libo Qin , Xuanyu Zhang , Qing Yang , Dongliang Xu , Wanxiang Che

Ising machines are dedicated hardware solvers of NP-hard optimization problems. However, they do not always find the most optimal solution. The probability of finding this optimal solution depends on the problem at hand. Using continuation…

Disordered Systems and Neural Networks · Physics 2024-12-10 Jacob Lamers , Guy Verschaffelt , Guy Van der Sande

Oscillator Ising machines (OIMs) represent an exemplar case of using physics-inspired non-linear dynamical systems to solve computationally challenging combinatorial optimization problems (COPs). The computational performance of such…

Machine Learning · Computer Science 2025-04-15 E. M. H. E. B. Ekanayake , N. Shukla

In this paper, we report new results on a novel Ising machine technology for solving combinatorial optimization problems using networks of coupled self-sustaining oscillators. Specifically, we present several working hardware prototypes…

Emerging Technologies · Computer Science 2019-04-24 Tianshi Wang , Leon Wu , Jaijeet Roychowdhury

In a seminal paper, Weitz showed that for two-state spin systems, such as the Ising and hardcore models from statistical physics, correlation decay on trees implies correlation decay on arbitrary graphs. The key gadget in Weitz's reduction…

Data Structures and Algorithms · Computer Science 2025-02-11 Kuikui Liu , Nitya Mani , Francisco Pernice

We study identity testing for restricted Boltzmann machines (RBMs), and more generally for undirected graphical models. Given sample access to the Gibbs distribution corresponding to an unknown or hidden model $M^*$ and given an explicit…

Data Structures and Algorithms · Computer Science 2020-04-24 Antonio Blanca , Zongchen Chen , Daniel Štefankovič , Eric Vigoda

We present an oscillator model with both phase and amplitude dynamics for oscillator-based Ising machines (OIMs). The model targets combinatorial optimization problems with polynomial cost functions of arbitrary order and addresses…

Emerging Technologies · Computer Science 2026-03-17 Lianlong Sun , Matthew X. Burns , Michael C. Huang

Inspired by the developments in quantum computing, building domain-specific classical hardware to solve computationally hard problems has received increasing attention. Here, by introducing systematic sparsification techniques, we…

The Ising and Potts models, among the most important models in statistical physics, have been used for modeling binary and multinomial data on lattices in a wide variety of disciplines such as psychology, image analysis, biology, and…

Methodology · Statistics 2025-09-29 Maria Paula Duenas-Herrera , Stephen Berg , Murali Haran

In this paper we combine an infeasible Interior Point Method (IPM) with the Proximal Method of Multipliers (PMM). The resulting algorithm (IP-PMM) is interpreted as a primal-dual regularized IPM, suitable for solving linearly constrained…

Optimization and Control · Mathematics 2021-02-01 Spyridon Pougkakiotis , Jacek Gondzio

Processing high-volume, streaming data is increasingly common in modern statistics and machine learning, where batch-mode algorithms are often impractical because they require repeated passes over the full dataset. This has motivated…