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Many biological processes display oscillatory behavior based on an approximately 24 hour internal timing system specific to each individual. One process of particular interest is gene expression, for which several circadian transcriptomic…

Applications · Statistics 2024-12-23 Michael Gorczyca , Tavish McDonald , Justice Sefas

Deep learning has shown promise in decoding brain signals, such as electroencephalogram (EEG), in the field of brain-computer interfaces (BCIs). However, the non-stationary characteristics of EEG signals pose challenges for training neural…

Machine Learning · Computer Science 2023-11-16 Byeong-Hoo Lee , Byoung-Hee Kwon , Seong-Whan Lee

We present Bayesian Spillover Graphs (BSG), a novel method for learning temporal relationships, identifying critical nodes, and quantifying uncertainty for multi-horizon spillover effects in a dynamic system. BSG leverages both an…

Methodology · Statistics 2022-06-20 Grace Deng , David S. Matteson

We develop a new modeling framework for Inter-Subject Analysis (ISA). The goal of ISA is to explore the dependency structure between different subjects with the intra-subject dependency as nuisance. It has important applications in…

Methodology · Statistics 2017-09-22 Cong Ma , Junwei Lu , Han Liu

Time delay is ubiquitous in many experimental and real-world situations. It is often unclear whether time delay plays a significant role in observed phenomena, and if it does, how long the time lag really is. This would be invaluable…

Data Analysis, Statistics and Probability · Physics 2025-12-10 Robin A. Kopp , Sabine H. L. Klapp , Deepak Gupta

Recent advances in recording technology have allowed neuroscientists to monitor activity from thousands of neurons simultaneously. Latent variable models are increasingly valuable for distilling these recordings into compact and…

Image-on-scalar regression has been a popular approach to modeling the association between brain activities and scalar characteristics in neuroimaging research. The associations could be heterogeneous across individuals in the population,…

Methodology · Statistics 2023-07-04 Zikai Lin , Yajuan Si , Jian Kang

Biological systems represent time from microseconds to years. An important gap in our knowledge concerns the mechanisms for encoding time intervals of hundreds of milliseconds to minutes that matter for tasks like navigation, communication,…

Neurons and Cognition · Quantitative Biology 2025-05-22 Raphaël Lafond-Mercier , Leonard Maler , Avner Wallach , André Longtin

Biological systems use neural circuits to integrate input information and produce outputs. Synaptic convergence, where multiple neurons converge their inputs onto a single downstream neuron, is common in natural neural circuits. However,…

Mesoscale and Nanoscale Physics · Physics 2026-02-04 Wendy Otieno , Alex Gabbitas , Debi Pattnaik , Pavel Borisov , Sergey Savel'ev , Alexander G. Balanov

The Gaussian graphical model (GGM) incorporates an undirected graph to represent the conditional dependence between variables, with the precision matrix encoding partial correlation between pair of variables given the others. To achieve…

Methodology · Statistics 2023-07-03 Yueqi Qian , Xianghong Hu , Can Yang

Discovering temporal lagged and inter-dependencies in multivariate time series data is an important task. However, in many real-world applications, such as commercial cloud management, manufacturing predictive maintenance, and portfolios…

Machine Learning · Computer Science 2018-12-12 Xuan-Hong Dang , Syed Yousaf Shah , Petros Zerfos

Brain-computer interfaces (BCIs) offer a pathway to restore communication for individuals with severe motor or speech impairments. Imagined handwriting provides an intuitive paradigm for character-level neural decoding, bridging the gap…

Signal Processing · Electrical Eng. & Systems 2025-10-24 Ovishake Sen , Raghav Soni , Darpan Virmani , Akshar Parekh , Patrick Lehman , Sarthak Jena , Adithi Katikhaneni , Adam Khalifa , Baibhab Chatterjee

The brain computer interface (BCI) is a nonstimulatory direct and occasionally bidirectional communication link between the brain and a computer or an external device. Classically, EEG-based BCI algorithms have relied on models such as…

Signal Processing · Electrical Eng. & Systems 2022-08-19 Andrea Duggento , Mario De Lorenzo , Stefano Bargione , Allegra Conti , Vincenzo Catrambone , Gaetano Valenza , Nicola Toschi

Motor imagery-based brain-computer interfaces (BCIs) use an individuals ability to volitionally modulate localized brain activity as a therapy for motor dysfunction or to probe causal relations between brain activity and behavior. However,…

Brain dynamics can exhibit narrow-band nonlinear oscillations and multistability. For a subset of disorders of consciousness and motor control, we hypothesize that some symptoms originate from the inability to spontaneously transition from…

Neurons and Cognition · Quantitative Biology 2020-06-24 Ian D. Jordan , Il Memming Park

We propose score dynamics (SD), a general framework for learning accelerated evolution operators with large timesteps from molecular-dynamics simulations. SD is centered around scores, or derivatives of the transition log-probability with…

Computational Physics · Physics 2024-03-08 Tim Hsu , Babak Sadigh , Vasily Bulatov , Fei Zhou

We introduce a constructive framework to learn effective Langevin equations from stationary time series. Unlike conventional approaches that require iterative calibration to match target statistics, our construction guarantees the observed…

Chaotic Dynamics · Physics 2026-02-16 Ludovico Theo Giorgini

Score-based diffusion models have significantly advanced generative deep learning for image processing. Measurement conditioned models have also been applied to inverse problems such as CT reconstruction. However, the conventional approach,…

Medical Physics · Physics 2025-02-24 Matthew Tivnan , Dufan Wu , Quanzheng Li

The "mind-controlling" capability has always been in mankind's fantasy. With the recent advancements of electroencephalograph (EEG) techniques, brain-computer interface (BCI) researchers have explored various solutions to allow individuals…

Human-Computer Interaction · Computer Science 2021-04-15 Di Wu , Huayan Wan , Siping Liu , Weiren Yu , Zhanpeng Jin , Dakuo Wang

Cognitive processes undergo various fluctuations and transient states across different temporal scales. Superstatistics are emerging as a flexible framework for incorporating such non-stationary dynamics into existing cognitive model…

Neurons and Cognition · Quantitative Biology 2024-10-02 Lukas Schumacher , Martin Schnuerch , Andreas Voss , Stefan T. Radev