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This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this method SEQR for SEQuence Retrieval. This approach increases the…

Genomics · Quantitative Biology 2018-11-05 David I. Hurwitz , Lianyi Han , Lewis Y. Geer

Comprehensively retrieving diverse documents is crucial to address queries that admit a wide range of valid answers. We introduce retrieve-verify-retrieve (RVR), a multi-round retrieval framework designed to maximize answer coverage.…

Computation and Language · Computer Science 2026-02-23 Deniz Qian , Hung-Ting Chen , Eunsol Choi

Dense vector retrieval is an important building block of modern machine learning systems, underlying applications ranging from semantic search to retrieval-augmented generation and knowledge-intensive reasoning. Beyond retrieving items that…

Information Retrieval · Computer Science 2026-05-25 Hang Gao , Dong Deng , Yongfeng Zhang

Vector search plays a crucial role in many real-world applications. In addition to single-vector search, multi-vector search becomes important for multi-modal and multi-feature scenarios today. In a multi-vector database, each row is an…

Databases · Computer Science 2026-05-05 Jiongli Zhu , Yue Wang , Bailu Ding , Philip A. Bernstein , Vivek Narasayya , Surajit Chaudhuri

Nowadays, data is represented by vectors. Retrieving those vectors, among millions and billions, that are similar to a given query is a ubiquitous problem, known as similarity search, of relevance for a wide range of applications.…

Machine Learning · Computer Science 2023-07-26 Cecilia Aguerrebere , Ishwar Bhati , Mark Hildebrand , Mariano Tepper , Ted Willke

Dense retrieval models use bi-encoder network architectures for learning query and document representations. These representations are often in the form of a vector representation and their similarities are often computed using the dot…

Information Retrieval · Computer Science 2023-05-01 Hamed Zamani , Michael Bendersky

High-dimensional big data appears in many research fields such as image recognition, biology and collaborative filtering. Often, the exploration of such data by classic algorithms is encountered with difficulties due to `curse of…

Machine Learning · Computer Science 2016-07-13 Amit Bermanis , Aviv Rotbart , Moshe Salhov , Amir Averbuch

Recent advances in dense retrieval techniques have offered the promise of being able not just to re-rank documents using contextualised language models such as BERT, but also to use such models to identify documents from the collection in…

Information Retrieval · Computer Science 2021-08-25 Nicola Tonellotto , Craig Macdonald

Domain specific information retrieval process has been a prominent and ongoing research in the field of natural language processing. Many researchers have incorporated different techniques to overcome the technical and domain specificity…

Modern deep learning models capture the semantics of complex data by transforming them into high-dimensional embedding vectors. Emerging applications, such as retrieval-augmented generation, use approximate nearest neighbor (ANN) search in…

Databases · Computer Science 2025-10-01 Guoyu Hu , Shaofeng Cai , Tien Tuan Anh Dinh , Zhongle Xie , Cong Yue , Gang Chen , Beng Chin Ooi

Classification is a common AI problem, and vector search is a typical solution. This transforms a given body of text into a numerical representation, known as an embedding, and modern improvements to vector search focus on optimising speed…

Information Retrieval · Computer Science 2025-06-04 Lee Harris

In many retrieval problems, where we must retrieve one or more entries from a gallery in response to a probe, it is common practice to learn to do by directly comparing the probe and gallery entries to one another. In many situations the…

Computer Vision and Pattern Recognition · Computer Science 2018-07-17 Yandong Wen , Mahmoud Al Ismail , Bhiksha Raj , Rita Singh

Retrieval-augmented language models can better adapt to changes in world state and incorporate long-tail knowledge. However, most existing methods retrieve only short contiguous chunks from a retrieval corpus, limiting holistic…

Computation and Language · Computer Science 2024-02-01 Parth Sarthi , Salman Abdullah , Aditi Tuli , Shubh Khanna , Anna Goldie , Christopher D. Manning

Within a large database G containing graphs with labeled nodes and directed, multi-edges; how can we detect the anomalous graphs? Most existing work are designed for plain (unlabeled) and/or simple (unweighted) graphs. We introduce…

Databases · Computer Science 2022-05-03 Hung T. Nguyen , Pierre J. Liang , Leman Akoglu

The search of information in large text repositories has been plagued by the so-called document-query vocabulary gap, i.e. the semantic discordance between the contents in the stored document entities on the one hand and the human query on…

Information Retrieval · Computer Science 2020-04-22 Bhawani Selvaretnam , Mohammed Belkhatir

Multimodal retrieval relies heavily on single-vector retrievers, which compress rich, sequential token sequences into one single global representation. While efficient, they discard fine-grained, local evidence critical for dense retrieval…

Information Retrieval · Computer Science 2026-05-26 Jianrui Zhang , Hyun Jung Lee , Sukanta Ganguly , Tae-Eui Kam , Donghyun Kim , Yong Jae Lee

Approximate nearest neighbor search (ANNS) has become a cornerstone in modern vector database systems. Given a query vector, ANNS retrieves the closest vectors from a set of base vectors. In real-world applications, vectors are often…

Databases · Computer Science 2026-03-03 Haoxuan Xie , Siqiang Luo

We consider a similarity measure between two sets $A$ and $B$ of vectors, that balances the average and maximum cosine distance between pairs of vectors, one from set $A$ and one from set $B$. As a motivation for this measure, we present…

Data Structures and Algorithms · Computer Science 2021-08-31 Michael Leybovich , Oded Shmueli

Multi-vector retrieval methods, exemplified by the ColBERT architecture, have shown substantial promise for retrieval by providing strong trade-offs in terms of retrieval latency and effectiveness. However, they come at a high cost in terms…

Information Retrieval · Computer Science 2025-04-03 Sean MacAvaney , Antonio Mallia , Nicola Tonellotto

A structured query can capture the complexity of object interactions (e.g. 'woman rides motorcycle') unlike single objects (e.g. 'woman' or 'motorcycle'). Retrieval using structured queries therefore is much more useful than single object…

Computer Vision and Pattern Recognition · Computer Science 2020-05-15 Brigit Schroeder , Subarna Tripathi