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Machine learning (ML) can be used to construct surrogate models for the fast prediction of a property of interest. ML can thus be applied to chemical projects, where the usual experimentation or calculation techniques can take hours or days…

Searching for potential active compounds in large databases is a necessary step to reduce time and costs in modern drug discovery pipelines. Such virtual screening methods seek to provide predictions that allow the search space to be…

Biomolecules · Quantitative Biology 2023-05-23 Rafael Mena-Yedra , Juana L. Redondo , Horacio Pérez-Sánchez , Pilar M. Ortigosa

Capturing the microscopic interactions that determine molecular reactivity poses a challenge across the physical sciences. Even a basic understanding of the underlying reaction mechanisms can substantially accelerate materials and compound…

Chemical Physics · Physics 2019-12-11 Carl Poelking , Yehia Amar , Alexei Lapkin , Lucy Colwell

Identifying and calibrating quantitative dynamical models for physical quantum systems is important for a variety of applications. Here we present a closed-loop Bayesian learning algorithm for estimating multiple unknown parameters in a…

Deep learning-based single-channel speaker separation has improved significantly in recent years largely due to the introduction of the transformer-based attention mechanism. However, these improvements come at the expense of intense…

Probability density models based on deep networks have achieved remarkable success in modeling complex high-dimensional datasets. However, unlike kernel density estimators, modern neural models do not yield marginals or conditionals in…

Machine Learning · Statistics 2021-06-10 Dar Gilboa , Ari Pakman , Thibault Vatter

Multilingual automatic speech recognition (ASR) remains a challenging task, especially when balancing performance across high- and low-resource languages. Recent advances in sequence modeling suggest that architectures beyond Transformers…

Computation and Language · Computer Science 2025-10-24 Mohamed Nabih Ali , Daniele Falavigna , Alessio Brutti

A new type of material with embedded intelligence, namely 'intelligent plasma', is introduced. Such new material exhibits programmable chemical pathway networks resembling artificial neural networks. As a Markov process of chemistry, the…

Emerging Technologies · Computer Science 2021-09-08 Li Lin , Michael Keidar

Objective: To enable continuous, long-term neuro-monitoring on wearable devices by overcoming the computational bottlenecks of Transformer-based Electroencephalography (EEG) foundation models and the quantization challenges inherent to…

Signal Processing · Electrical Eng. & Systems 2026-03-31 Anna Tegon , Nicholas Lehmann , Yawei Li , Andrea Cossettini , Luca Benini , Thorir Mar Ingolfsson

Bioelectrical properties of cells such as relative permittivity, conductivity, and characteristic time constants vary significantly between healthy and malignant cells across different frequencies. These distinctions provide a promising…

Signal Processing · Electrical Eng. & Systems 2026-03-16 Shadeeb Hossain

A common practice in metric learning is to train and test an embedding model for each dataset. This dataset-specific approach fails to simulate real-world scenarios that involve multiple heterogeneous distributions of data. In this regard,…

Computer Vision and Pattern Recognition · Computer Science 2025-01-22 Sungyeon Kim , Donghyun Kim , Suha Kwak

Modern therapeutic antibody design often involves composing multi-part assemblages of individual functional domains, each of which may be derived from a different source or engineered independently. While these complex formats can expand…

Machine Learning · Computer Science 2025-09-25 Jiayi Xin , Aniruddh Raghu , Nick Bhattacharya , Adam Carr , Melanie Montgomery , Hunter Elliott

We present a machine learning pipeline for biomarker discovery in Multiple Sclerosis (MS), integrating eight publicly available microarray datasets from Peripheral Blood Mononuclear Cells (PBMC). After robust preprocessing we trained an…

Machine Learning · Computer Science 2025-09-29 Samuele Punzo , Silvia Giulia Galfrè , Francesco Massafra , Alessandro Maglione , Corrado Priami , Alina Sîrbu

Determining the physicochemical properties of a protein can reveal important insights in their structure, biological functions, stability, and interactions with other molecules. Although tools for computing properties of proteins already…

Biomolecules · Quantitative Biology 2023-12-05 Gustavo Sganzerla Martinez , Mansi Dutt , Anuj Kumar , David J Kelvin

Protein Structure Prediction (PSP) is an unsolved problem in the field of computational biology. The problem of protein structure prediction is about predicting the native conformation of a protein, while its sequence of amino acids is…

Biomolecules · Quantitative Biology 2022-06-06 Hossein Parineh , Nasser Mozayani

Biomedical data are widely accepted in developing prediction models for identifying a specific tumor, drug discovery and classification of human cancers. However, previous studies usually focused on different classifiers, and overlook the…

Quantitative Methods · Quantitative Biology 2019-11-05 Shigang Liu , Jun Zhang , Yang Xiang , Wanlei Zhou , Dongxi Xiang

We study parametric Markov decision processes (PMDPs) and their reachability probabilities "independent" of the parameters. Different to existing work on parameter synthesis (implemented in the tools PARAM and PRISM), our main focus is on…

Logic in Computer Science · Computer Science 2017-07-14 Sebastian Arming , Ezio Bartocci , Ana Sokolova

Operating LLMs as coordinated multi-agent research systems over multi-hour runs surfaces failure modes that single-shot evaluation cannot: upstream providers throttle without warning, sub-agents drift the task to fit accessible tools,…

Artificial Intelligence · Computer Science 2026-05-26 Sasank Annapureddy

Predicting material properties has always been a challenging task in materials science. With the emergence of machine learning methodologies, new avenues have opened up. In this study, we build upon our recently developed Graph Neural…

Materials Science · Physics 2024-04-25 Si-Da Xue , Qi-Jun Hong

Multimodal single-cell technologies enable the simultaneous collection of diverse data types from individual cells, enhancing our understanding of cellular states. However, the integration of these datatypes and modeling the…

Machine Learning · Computer Science 2023-11-22 Bhavya Mehta , Nirmit Deliwala , Madhav Chandane