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Analogies play a central role in human commonsense reasoning. The ability to recognize analogies such as "eye is to seeing what ear is to hearing", sometimes referred to as analogical proportions, shape how we structure knowledge and…

Computation and Language · Computer Science 2022-09-12 Asahi Ushio , Luis Espinosa-Anke , Steven Schockaert , Jose Camacho-Collados

Molecular representation learning (MRL) has long been crucial in the fields of drug discovery and materials science, and it has made significant progress due to the development of natural language processing (NLP) and graph neural networks…

Information Theory · Computer Science 2023-05-25 Chen Gong , Yvon Maday

Self-explaining models are models that reveal decision making parameters in an interpretable manner so that the model reasoning process can be directly understood by human beings. General Linear Models (GLMs) are self-explaining because the…

Machine Learning · Computer Science 2019-05-31 Yingjing Lu , Runde Yang

Large language models (LLMs) achieve strong performance across many natural language processing tasks, yet their decision processes remain difficult to interpret. This lack of transparency creates challenges for trust, debugging, and…

Computation and Language · Computer Science 2026-04-20 Venkata Abhinandan Kancharla

Language models, especially transformer-based ones, have achieved colossal success in NLP. To be precise, studies like BERT for NLU and works like GPT-3 for NLG are very important. If we consider DNA sequences as a text written with an…

Genomics · Quantitative Biology 2026-01-21 Musa Nuri Ihtiyar , Arzucan Ozgur

Recursive neural networks (RvNN) have been shown useful for learning sentence representations and helped achieve competitive performance on several natural language inference tasks. However, recent RvNN-based models fail to learn simple…

Computation and Language · Computer Science 2021-04-13 Atul Sahay , Ayush Maheshwari , Ritesh Kumar , Ganesh Ramakrishnan , Manjesh Kumar Hanawal , Kavi Arya

The fields of generative AI and transfer learning have experienced remarkable advancements in recent years especially in the domain of Natural Language Processing (NLP). Transformers have been at the heart of these advancements where the…

Computation and Language · Computer Science 2024-02-28 Majd Saleh , Stéphane Paquelet

As more deep learning models are being applied in real-world applications, there is a growing need for modeling and learning the representations of neural networks themselves. An efficient representation can be used to predict target…

Machine Learning · Computer Science 2023-10-17 Yun Yi , Haokui Zhang , Rong Xiao , Nannan Wang , Xiaoyu Wang

GPT-2 and BERT demonstrate the effectiveness of using pre-trained language models (LMs) on various natural language processing tasks. However, LM fine-tuning often suffers from catastrophic forgetting when applied to resource-rich tasks. In…

Computation and Language · Computer Science 2022-06-22 Jiacheng Yang , Mingxuan Wang , Hao Zhou , Chengqi Zhao , Yong Yu , Weinan Zhang , Lei Li

Even though sequence-to-sequence neural machine translation (NMT) model have achieved state-of-art performance in the recent fewer years, but it is widely concerned that the recurrent neural network (RNN) units are very hard to capture the…

Computation and Language · Computer Science 2018-05-28 Wen Zhang , Jiawei Hu , Yang Feng , Qun Liu

NLP-based computer vision models, particularly vision transformers, have been shown to outperform CNN models in many imaging tasks. However, most digital pathology artificial-intelligence models are based on CNN architectures, probably…

Computation and Language · Computer Science 2023-02-22 Min Cen , Xingyu Li , Bangwei Guo , Jitendra Jonnagaddala , Hong Zhang , Xu Steven Xu

Constructing appropriate representations of molecules lies at the core of numerous tasks such as material science, chemistry and drug designs. Recent researches abstract molecules as attributed graphs and employ graph neural networks (GNN)…

Machine Learning · Computer Science 2021-07-29 Jianwen Chen , Shuangjia Zheng , Ying Song , Jiahua Rao , Yuedong Yang

With the rapid deployment of graph neural networks (GNNs) based techniques into a wide range of applications such as link prediction, node classification, and graph classification the explainability of GNNs has become an indispensable…

Machine Learning · Computer Science 2023-01-03 Yiqiao Li , Jianlong Zhou , Boyuan Zheng , Fang Chen

While a large body of literature suggests that large language models (LLMs) acquire rich linguistic representations, little is known about whether they adapt to linguistic biases in a human-like way. The present study probes this question…

Computation and Language · Computer Science 2023-05-29 Suet-Ying Lam , Qingcheng Zeng , Kexun Zhang , Chenyu You , Rob Voigt

Language Models are the underpin of all modern Natural Language Processing (NLP) tasks. The introduction of the Transformers architecture has contributed significantly into making Language Modeling very effective across many NLP task,…

Computation and Language · Computer Science 2021-11-05 Nikolaos Stylianou , Ioannis Vlahavas

Recent developments in transformer-based language models have allowed them to capture a wide variety of world knowledge that can be adapted to downstream tasks with limited resources. However, what pieces of information are understood in…

Computation and Language · Computer Science 2024-01-31 Shrayani Mondal , Rishabh Garodia , Arbaaz Qureshi , Taesung Lee , Youngja Park

Transformer-based models have achieved remarkable success in natural language and vision tasks, but their application to gene expression analysis remains limited due to data sparsity, high dimensionality, and missing values. We present…

Machine Learning · Computer Science 2025-04-15 Shuai Jiang , Saeed Hassanpour

Interpreting complex neural networks is crucial for understanding their decision-making processes, particularly in applications where transparency and accountability are essential. This proposed method addresses this need by focusing on…

Neural and Evolutionary Computing · Computer Science 2024-12-10 Deepshikha Bhati , Fnu Neha , Md Amiruzzaman , Angela Guercio , Deepak Kumar Shukla , Ben Ward

Graph Neural Networks (GNNs) have emerged as powerful tools for learning over structured data, including text-attributed graphs (TAGs), which are common in domains such as citation networks, social platforms, and knowledge graphs. GNNs are…

Machine Learning · Computer Science 2026-04-23 Peyman Baghershahi , Gregoire Fournier , Pranav Nyati , Sourav Medya

The Transformer is a fully attention-based alternative to recurrent networks that has achieved state-of-the-art results across a range of NLP tasks. In this paper, we analyze the structure of attention in a Transformer language model, the…

Computation and Language · Computer Science 2019-06-20 Jesse Vig , Yonatan Belinkov