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Extracting molecular structure-activity relationships (SARs) from scientific literature and patents is essential for drug discovery and materials research. However, this task remains challenging due to heterogeneous document formats and…

Computation and Language · Computer Science 2025-10-14 Jiaxi Zhuang , Kangning Li , Jue Hou , Mingjun Xu , Zhifeng Gao , Hengxing Cai

As web agents (e.g., Deep Research) routinely consume massive volumes of web pages to gather and analyze information, LLM context management -- under large token budgets and low signal density -- emerges as a foundational, high-importance,…

Information Retrieval · Computer Science 2025-12-09 Yihan Chen , Benfeng Xu , Xiaorui Wang , Zhendong Mao

Table structure recognition is necessary for a comprehensive understanding of documents. Tables in unstructured business documents are tough to parse due to the high diversity of layouts, varying alignments of contents, and the presence of…

Computer Vision and Pattern Recognition · Computer Science 2021-11-16 Sachin Raja , Ajoy Mondal , C V Jawahar

Large Language Models (LLMs) are increasingly utilized for large-scale extraction and organization of unstructured data owing to their exceptional Natural Language Processing (NLP) capabilities. Empowering materials design, vast amounts of…

Digital Libraries · Computer Science 2025-12-11 Wenkai Ning , Musen Li , Jeffrey R. Reimers , Rika Kobayashi

Structuring medical data in France remains a challenge mainly because of the lack of medical data due to privacy concerns and the lack of methods and approaches on processing the French language. One of these challenges is structuring…

Computation and Language · Computer Science 2021-12-22 Azzam Alwan , Maayane Attias , Larry Rubin , Adnan El Bakri

Tabular data is difficult to analyze and to search through, yielding for new tools and interfaces that would allow even non tech-savvy users to gain insights from open datasets without resorting to specialized data analysis tools or even…

Information Retrieval · Computer Science 2017-08-31 Svitlana Vakulenko , Vadim Savenkov

Generating synthetic tabular health data is challenging, and evaluating their quality is equally, if not more, complex. This systematic review highlights the critical importance of rigorous evaluation of synthetic health data to ensure…

Machine Learning · Computer Science 2026-05-15 Nazia Nafis , Inaki Esnaola , Alvaro Martinez-Perez , Maria-Cruz Villa-Uriol , Venet Osmani

Extracting structured and quantitative insights from unstructured financial filings is essential in investment research, yet remains time-consuming and resource-intensive. Conventional approaches in practice rely heavily on labor-intensive…

Artificial Intelligence · Computer Science 2025-06-27 Chanyeol Choi , Alejandro Lopez-Lira , Yongjae Lee , Jihoon Kwon , Minjae Kim , Juneha Hwang , Minsoo Ha , Chaewoon Kim , Jaeseon Ha , Suyeol Yun , Jin Kim

The rapid expansion of enzyme kinetics literature has outpaced the curation capabilities of major biochemical databases, creating a substantial barrier to AI-driven modeling and knowledge discovery. We present zERExtractor, an automated and…

The challenge of recognizing named entities in a given text has been a very dynamic field in recent years. This is due to the advances in neural network architectures, increase of computing power and the availability of diverse labeled…

Computation and Language · Computer Science 2023-01-10 Nasi Jofche , Kostadin Mishev , Riste Stojanov , Milos Jovanovik , Dimitar Trajanov

Increasing clinical trial protocol complexity, amendments, and challenges around knowledge management create significant burden for trial teams. Structuring protocol content into standard formats has the potential to improve efficiency,…

Information Retrieval · Computer Science 2026-04-20 Ramtin Babaeipour , François Charest , Madison Wright

Pattern extraction algorithms are enabling insights into the ever-growing amount of today's datasets by translating reoccurring data properties into compact representations. Yet, a practical problem arises: With increasing data volumes and…

Information Retrieval · Computer Science 2018-07-05 Michael Behrisch , Robert Krueger , Fritz Lekschas , Tobias Schreck , Nils Gehlenborg , Hanspeter Pfister

Literature analysis facilitates researchers better understanding the development of science and technology. The conventional literature analysis focuses on the topics, authors, abstracts, keywords, references, etc., and rarely pays…

Machine Learning · Computer Science 2019-12-02 Rujing Yao , Linlin Hou , Yingchun Ye , Ou Wu , Ji Zhang , Jian Wu

Large Language Models (LLMs) demonstrate exceptional performance in textual understanding and tabular reasoning tasks. However, their ability to comprehend and analyze hybrid text, containing textual and tabular data, remains underexplored.…

Computation and Language · Computer Science 2024-03-08 Chongjian Yue , Xinrun Xu , Xiaojun Ma , Lun Du , Hengyu Liu , Zhiming Ding , Yanbing Jiang , Shi Han , Dongmei Zhang

Systematic use of the published results of randomized clinical trials is increasingly important in evidence-based medicine. In order to collate and analyze the results from potentially numerous trials, evidence tables are used to represent…

Computation and Language · Computer Science 2015-09-18 Antonio Trenta , Anthony Hunter , Sebastian Riedel

Scientific literature contain important information related to cutting-edge innovations in diverse domains. Advances in natural language processing have been driving the fast development in automated information extraction from scientific…

Information Retrieval · Computer Science 2021-06-29 Antonio Jimeno Yepes , Xu Zhong , Douglas Burdick

Knowledge base construction is crucial for summarising, understanding and inferring relationships between biomedical entities. However, for many practical applications such as drug discovery, the scarcity of relevant facts (e.g. gene X is…

Computation and Language · Computer Science 2019-07-04 Julien Fauqueur , Ashok Thillaisundaram , Theodosia Togia

Relevant information in documents is often summarized in tables, helping the reader to identify useful facts. Most benchmark datasets support either document layout analysis or table understanding, but lack in providing data to apply both…

Computation and Language · Computer Science 2023-02-14 Andrea Gemelli , Emanuele Vivoli , Simone Marinai

Tabular data comprising rows (samples) with the same set of columns (attributes, is one of the most widely used data-type among various industries, including financial services, health care, research, retail, and logistics, to name a few.…

Machine Learning · Computer Science 2023-02-24 Rajat Singh , Srikanta Bedathur

Systematic reviews and meta-analyses rely on converting narrative articles into structured, numerically grounded study records. Despite rapid advances in large language models (LLMs), it remains unclear whether they can meet the structural…

Computation and Language · Computer Science 2026-02-12 Zhiyin Tan , Jennifer D'Souza
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