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Recent advances in the audio language modeling (ALM) domain tackle audio understanding and text-to-audio generation as separate tasks. Very few studies attempt to unify these tasks -- an essential step toward advanced multimodal reasoning.…

Large language model (LLM) agents are increasingly deployed in structured biomedical data environments, yet they often produce fluent but overconfident outputs when reasoning over complex multi-table data. We introduce an uncertainty-aware…

While interpretable prototype networks offer compelling case-based reasoning for clinical diagnostics, their raw continuous outputs lack the semantic structure required for medical documentation. Bridging this gap via standard…

Computer Vision and Pattern Recognition · Computer Science 2026-05-29 Alvaro Lopez Pellicer , Plamen Angelov , Marwan Bukhari , Yi Li , Eduardo Soares , Jemma Kerns

Amorphous multi-element materials offer unprecedented tunability in composition and properties, yet their rational design remains challenging due to the lack of predictive structure-property relationships and the vast configurational space.…

Understanding how chemical perturbations propagate through biological systems is essential for robust molecular property prediction. While most existing methods focus on chemical structures alone, recent advances highlight the crucial role…

Machine Learning · Computer Science 2025-11-27 Mengran Li , Zelin Zang , Wenbin Xing , Junzhou Chen , Ronghui Zhang , Jiebo Luo , Stan Z. Li

Retrieval-based multimodal document QA aims to identify and integrate relevant information from visually rich documents with complex multimodal structures. While retrieval-augmented generation (RAG) has shown strong performance in…

Information Retrieval · Computer Science 2026-04-21 Hui Wu , Haoquan Zhai , Yuchen Li , Hengyi Cai , Peirong Zhang , Yidan Zhang , Lei Wang , Chunle Wang , Yingyan Hou , Shuaiqiang Wang , Dawei Yin

Academic advising in higher education is under severe strain, with advisor-to-student ratios commonly exceeding 300:1. These structural bottlenecks limit timely access to guidance, increase the risk of delayed graduation, and contribute to…

Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel at representing sequences, they struggle with multi-step…

Time series anomaly detection (TSAD) has traditionally focused on binary classification and often lacks the fine-grained categorization and explanatory reasoning required for transparent decision-making. To address these limitations, we…

Machine Learning · Computer Science 2026-04-17 Yiyuan Yang , Zichuan Liu , Lei Song , Kai Ying , Zhiguang Wang , Tom Bamford , Svitlana Vyetrenko , Jiang Bian , Qingsong Wen

Far from being a passive information store, the genome is a mechanically dynamic and diverse system in which torsion and tension fluctuate and combine to determine structure and help regulate gene expression. Much of this mechanical…

Biomolecules · Quantitative Biology 2021-09-01 Jack W Shepherd , Mark C Leake

Retrieval-Augmented Generation (RAG) improves factual grounding by incorporating external knowledge into language model generation. However, when retrieved context is noisy, unreliable, or inconsistent with the model's parametric knowledge,…

Computation and Language · Computer Science 2026-04-06 Jaemin Kim , Jong Chul Ye

The rapid proliferation of multimodal misinformation presents significant challenges for automated fact-checking systems, especially when claims are ambiguous or lack sufficient context. We introduce RAMA, a novel retrieval-augmented…

Computation and Language · Computer Science 2025-07-15 Shuo Yang , Zijian Yu , Zhenzhe Ying , Yuqin Dai , Guoqing Wang , Jun Lan , Jinfeng Xu , Jinze Li , Edith C. H. Ngai

Condition monitoring (CM) plays a crucial role in ensuring reliability and efficiency in the process industry. Although computerised maintenance systems effectively detect and classify faults, tasks like fault severity estimation, and…

Machine Learning · Computer Science 2025-06-12 Karl Löwenmark , Daniel Strömbergsson , Chang Liu , Marcus Liwicki , Fredrik Sandin

We introduce ADAM (A Diverse Archive of Mankind), a framework for evaluating and improving multimodal large language models (MLLMs) in biographical reasoning. To the best of our knowledge, this is the first work to systematically examine…

Computation and Language · Computer Science 2025-09-30 Jasin Cekinmez , Omid Ghahroodi , Saad Fowad Chandle , Dhiman Gupta , Ehsaneddin Asgari

Deep learning based automated pathological diagnosis has markedly improved diagnostic efficiency and reduced variability between observers, yet its clinical adoption remains limited by opaque model decisions and a lack of traceable…

In question-answering (QA) systems, Retrieval-Augmented Generation (RAG) has become pivotal in enhancing response accuracy and reducing hallucination issues. The architecture of RAG systems varies significantly, encompassing single-round…

Computation and Language · Computer Science 2025-08-05 Yiqun Chen , Erhan Zhang , Lingyong Yan , Shuaiqiang Wang , Jizhou Huang , Dawei Yin , Jiaxin Mao

Multimodal document question answering requires retrieving dispersed evidence from visually rich long documents and performing reliable reasoning over heterogeneous information. Existing multimodal RAG systems remain limited by two…

Information Retrieval · Computer Science 2026-03-18 Jiashu Yang , Chi Zhang , Abudukelimu Wuerkaixi , Xuxin Cheng , Cao Liu , Ke Zeng , Xu Jia , Xunliang Cai

This paper outlines the conceptual and computational foundations of the AURORA (Acoustic Understanding and Real-time Observation of Resonant Articulations) model. AURORA predicts tongue displacement and shape in vowel sounds based on the…

Computation and Language · Computer Science 2026-03-19 Patrycja Strycharczuk , Sam Kirkham

Agentic Retrieval-Augmented Generation (RAG) systems enhance Large Language Models (LLMs) by enabling dynamic, multi-step reasoning and information retrieval. However, these systems often exhibit sub-optimal search behaviors like…

Computation and Language · Computer Science 2025-10-10 Peilin Wu , Mian Zhang , Xinlu Zhang , Xinya Du , Zhiyu Zoey Chen

Virtual cell (VC) models aim to predict cellular responses to any perturbations in silico and have emerged as a promising approach for drug discovery and precision medicine. Yet, a clear gap still remains: while models routinely reported…

Cell Behavior · Quantitative Biology 2026-05-01 Xinjie Mao , Songming Zhang , Qianhong Wen , Xiangyu Wen , Kedu Jin , Hao Wu , Shuizhou Chen , Yuqiang Li , Lei Bai , Qi Liu , Ning Ding , Siqi Sun , Zhangyang Gao
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