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Multi-segment reconstruction (MSR) problem consists of recovering a signal from noisy segments with unknown positions of the observation windows. One example arises in DNA sequence assembly, which is typically solved by matching short reads…
Coarse-graining (CG) accelerates molecular simulations of protein dynamics by simulating sets of atoms as singular beads. Backmapping is the opposite operation of bringing lost atomistic details back from the CG representation. While…
The primary objective of Optical Chemical Structure Recognition is to identify chemical structure images into corresponding markup sequences. However, the complex two-dimensional structures of molecules, particularly those with rings and…
The representation of knowledge based on first-order logic captures the richness of natural language and supports multiple probabilistic inference models. Although symbolic representation enables quantitative reasoning with statistical…
The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…
A unified structural framework is presented for model-based fault diagnosis that explicitly incorporates both fault locations and constraints imposed by the residual generation methodology. Building on the concepts of proper and minimal…
Multimodal recommendation aims to recommend user-preferred candidates based on her/his historically interacted items and associated multimodal information. Previous studies commonly employ an embed-and-retrieve paradigm: learning user and…
Low-rank tensor representation (LRTR) has emerged as a powerful tool for multi-dimensional data processing. However, classical LRTR-based methods face two critical limitations: (1) they typically assume that the holistic data is low-rank,…
Discovering a meaningful symbolic expression that explains experimental data is a fundamental challenge in many scientific fields. We present a novel, open-source computational framework called Scientist-Machine Equation Detector (SciMED),…
One main challenge in imbalanced graph classification is to learn expressive representations of the graphs in under-represented (minority) classes. Existing generic imbalanced learning methods, such as oversampling and imbalanced learning…
Deep learning based joint source-channel coding (JSCC) has demonstrated significant advancements in data reconstruction compared to separate source-channel coding (SSCC). This superiority arises from the suboptimality of SSCC when dealing…
Learning multiple tasks sequentially without forgetting previous knowledge, called Continual Learning(CL), remains a long-standing challenge for neural networks. Most existing methods rely on additional network capacity or data replay. In…
Generative retrieval (GR) has emerged as a new paradigm in neural information retrieval, offering an alternative to dense retrieval (DR) by directly generating identifiers of relevant documents. In this paper, we theoretically and…
Despite the progress of radiology report generation (RRG), existing works face two challenges: 1) The performances in clinical efficacy are unsatisfactory, especially for lesion attributes description; 2) the generated text lacks…
Multiple human parsing aims to segment various human parts and associate each part with the corresponding instance simultaneously. This is a very challenging task due to the diverse human appearance, semantic ambiguity of different body…
While contemporary deep learning malware detectors define a dominant defense paradigm, their sophistication also exposes them to novel structural evasion attacks, a limitation we attribute to their inherent inability to express epistemic…
We challenge black-box purely deep neural approaches for molecules and graph generation, which are limited in controllability and lack formal guarantees. We introduce Neuro-Symbolic Graph Generative Modeling (NSGGM), a neurosymbolic…
The study of representations is of fundamental importance to any form of communication, and our ability to exploit them effectively is paramount. This article presents a novel theory -- Representational Systems Theory -- that is designed to…
Rendering novel views from captured multi-view images has made considerable progress since the emergence of the neural radiance field. This paper aims to further advance the quality of view synthesis by proposing a novel approach dubbed the…
Despite the availability of various sequence analysis models, comparative genomic analysis remains a challenge in genomics, genetics, and phylogenetics. Commutative algebra, a fundamental tool in algebraic geometry and number theory, has…