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Machine learning on trees has been mostly focused on trees as input to algorithms. Much less research has investigated trees as output, which has many applications, such as molecule optimization for drug discovery, or hint generation for…

Machine Learning · Computer Science 2022-02-11 Benjamin Paassen , Irena Koprinska , Kalina Yacef

Text embedding and generative tasks are usually trained separately based on large language models (LLMs) nowadays. This causes a large amount of training cost and deployment effort. Context compression is also a challenging and pressing…

Computation and Language · Computer Science 2026-05-13 Zhongtao Miao , Qiyu Wu , Yoshimasa Tsuruoka

Retrieval-Augmented Generation (RAG) over Knowledge Graphs (KGs) suffers from the fact that indexing approaches may lose important contextual nuance when text is reduced to triples, thereby degrading performance in downstream…

Computation and Language · Computer Science 2026-03-13 Riccardo Campi , Nicolò Oreste Pinciroli Vago , Mathyas Giudici , Marco Brambilla , Piero Fraternali

Masked graph modeling excels in the self-supervised representation learning of molecular graphs. Scrutinizing previous studies, we can reveal a common scheme consisting of three key components: (1) graph tokenizer, which breaks a molecular…

Machine Learning · Computer Science 2024-01-17 Zhiyuan Liu , Yaorui Shi , An Zhang , Enzhi Zhang , Kenji Kawaguchi , Xiang Wang , Tat-Seng Chua

Medical decision-making makes frequent use of algorithms that combine risk equations with rules, providing clear and standardized treatment pathways. Symbolic regression (SR) traditionally limits its search space to continuous function…

Recent advances in graph learning have paved the way for innovative retrieval-augmented generation (RAG) systems that leverage the inherent relational structures in graph data. However, many existing approaches suffer from rigid, fixed…

Information Retrieval · Computer Science 2025-03-26 Yuan Li , Jun Hu , Jiaxin Jiang , Zemin Liu , Bryan Hooi , Bingsheng He

Coarse-graining (CG) of molecular simulations simplifies the particle representation by grouping selected atoms into pseudo-beads and drastically accelerates simulation. However, such CG procedure induces information losses, which makes…

Machine Learning · Computer Science 2022-06-20 Wujie Wang , Minkai Xu , Chen Cai , Benjamin Kurt Miller , Tess Smidt , Yusu Wang , Jian Tang , Rafael Gómez-Bombarelli

Compressed Sensing Magnetic Resonance Imaging (CS-MRI) significantly accelerates MR data acquisition at a sampling rate much lower than the Nyquist criterion. A major challenge for CS-MRI lies in solving the severely ill-posed inverse…

Image and Video Processing · Electrical Eng. & Systems 2019-10-30 Risheng Liu , Yuxi Zhang , Shichao Cheng , Zhongxuan Luo , Xin Fan

The rapid expansion in the size of new datasets has created a need for fast and efficient parameter-learning techniques. Compressive learning is a framework that enables efficient processing by using random, non-linear features to project…

Machine Learning · Computer Science 2025-08-18 Daniel Mas Montserrat , David Bonet , Maria Perera , Xavier Giró-i-Nieto , Alexander G. Ioannidis

This paper focuses on learning representation on the whole graph level in an unsupervised manner. Learning graph-level representation plays an important role in a variety of real-world issues such as molecule property prediction, protein…

Machine Learning · Computer Science 2024-01-08 Ge Wang , Zelin Zang , Jiangbin Zheng , Jun Xia , Stan Z. Li

The newly proposed Generalized Referring Expression Segmentation (GRES) amplifies the formulation of classic RES by involving complex multiple/non-target scenarios. Recent approaches address GRES by directly extending the well-adopted RES…

Computer Vision and Pattern Recognition · Computer Science 2024-11-26 Zhuoyan Luo , Yinghao Wu , Tianheng Cheng , Yong Liu , Yicheng Xiao , Hongfa Wang , Xiao-Ping Zhang , Yujiu Yang

Objective. Standard Magnetic Resonance Imaging (MRI) reconstruction pipelines discard phase information captured during acquisition, despite evidence that it encodes tissue properties relevant to tumor diagnosis. Current machine learning…

Image and Video Processing · Electrical Eng. & Systems 2026-04-17 Marco Schlimbach , Moritz Rempe , Jessica Mnischek , Lukas T. Rotkopf , Jens Weingarten , Jens Kleesiek , Kevin Kröninger

Recent techniques such as retrieval-augmented generation or chain-of-thought reasoning have led to longer contexts and increased inference costs. Context compression techniques can reduce these costs, but the most effective approaches…

Computation and Language · Computer Science 2025-10-24 Hippolyte Pilchen , Edouard Grave , Patrick Pérez

In this work, we applied the Chaos Game Representation (CGR) to the complete human genomic sequence T2T-CHM13v2.0, analyzing the entire chromosome assembly and each chromosome separately, including mitochondrial DNA. Multifractal spectra…

Other Quantitative Biology · Quantitative Biology 2024-12-24 Yulián A. Alvarez-Ballesteros , Mario A. Quiroz-Juarez , José L. Del-Rio-Correa , Adrian M. Escobar-Ruiz

Monocular Semantic Scene Completion (MSSC) aims to predict the voxel-wise occupancy and semantic category from a single-view RGB image. Existing methods adopt a single-stage framework that aims to simultaneously achieve visible region…

Computer Vision and Pattern Recognition · Computer Science 2025-07-24 Xuzhi Wang , Xinran Wu , Song Wang , Lingdong Kong , Ziping Zhao

Aggregating multi-site brain MRI data can enhance deep learning model training, but also introduces non-biological heterogeneity caused by site-specific variations (e.g., differences in scanner vendors, acquisition parameters, and imaging…

Computer Vision and Pattern Recognition · Computer Science 2026-01-14 Mengqi Wu , Yongheng Sun , Qianqian Wang , Pew-Thian Yap , Mingxia Liu

Magnetic Resonance Imaging (MRI) is one of the most dynamic and safe imaging techniques available for clinical applications. However, the rather slow speed of MRI acquisitions limits the patient throughput and potential indi cations.…

Computer Vision and Pattern Recognition · Computer Science 2018-11-14 Risheng Liu , Yuxi Zhang , Shichao Cheng , Xin Fan , Zhongxuan Luo

In the modern era of large-scale computing systems, a crucial use of error correcting codes is to judiciously introduce redundancy to ensure recoverability from failure. To get the most out of every byte, practitioners and theorists have…

Information Theory · Computer Science 2026-02-26 Joshua Brakensiek , Venkatesan Guruswami

Large Language Models (LLMs) and their multimodal variants (LVLMs) hold immense promise for scientific and engineering applications, particularly in processing visual information like scientific diagrams. However, their practical deployment…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Minghao Zhou , Rafael Souza , Yaqian Hu , Luming Che

Generating radiology reports automatically reduces the workload of radiologists and helps the diagnoses of specific diseases. Many existing methods take this task as modality transfer process. However, since the key information related to…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Yitian Tao , Liyan Ma , Jing Yu , Han Zhang