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Understanding the higher-order interactions within network data is a key objective of network science. Surveys of metadata triangles (or patterned 3-cycles in metadata-enriched graphs) are often of interest in this pursuit. In this work, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-27 Trevor Steil , Tahsin Reza , Keita Iwabuchi , Benjamin W. Priest , Geoffrey Sanders , Roger Pearce

We introduce an R package, PCMBase, to rapidly calculate the likelihood for multivariate phylogenetic comparative methods. The package is not specific to particular models but offers the user the functionality to very easily implement a…

Populations and Evolution · Quantitative Biology 2019-12-13 Venelin Mitov , Krzysztof Bartoszek , Georgios Asimomitis , Tanja Stadler

Clustering is an important data mining technique that groups similar data records, recently categorical transaction clustering is received more attention. In this research, we study the problem of categorical data clustering for…

Databases · Computer Science 2017-05-03 Mahmoud Mahdi , Samir Abdelrahman , Reem Bahgat , Ismail Ismail

One of the main obstacles for the signal extraction of the three point correlation function using photometric surveys, such as the Rubin Observatory Legacy Survey of Space and Time (LSST), will be the prohibitive computation time required…

Understanding and analyzing the spatial semantics and structure of forests is essential for accurate forest resource monitoring and ecosystem research. However, the lack of large-scale and annotated datasets has limited the widespread use…

Computer Vision and Pattern Recognition · Computer Science 2025-01-08 Jing Liu , Duanchu Wang , Haoran Gong , Chongyu Wang , Jihua Zhu , Di Wang

The use of brain images as markers for diseases or behavioral differences is challenged by the small effects size and the ensuing lack of power, an issue that has incited researchers to rely more systematically on large cohorts. Coupled…

Machine Learning · Statistics 2015-11-17 Bertrand Thirion , Andrés Hoyos-Idrobo , Jonas Kahn , Gael Varoquaux

Nonlinear reformulations of the spectral clustering method have gained a lot of recent attention due to their increased numerical benefits and their solid mathematical background. However, the estimation of the multiple nonlinear…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-27 Dimosthenis Pasadakis , Olaf Schenk , Verner Vlacic , Albert-Jan Yzelman

Originally, tangles were invented as an abstract tool in mathematical graph theory to prove the famous graph minor theorem. In this paper, we showcase the practical potential of tangles in machine learning applications. Given a collection…

Contour trees offer an abstract representation of the level set topology in scalar fields and are widely used in topological data analysis and visualization. However, applying contour trees to large-scale scientific datasets remains…

Computational Geometry · Computer Science 2025-08-13 Mingzhe Li , Hamish Carr , Oliver Rübel , Bei Wang , Gunther H. Weber

Visual clustering is a common perceptual task in scatterplots that supports diverse analytics tasks (e.g., cluster identification). However, even with the same scatterplot, the ways of perceiving clusters (i.e., conducting visual…

Human-Computer Interaction · Computer Science 2023-08-14 Hyeon Jeon , Ghulam Jilani Quadri , Hyunwook Lee , Paul Rosen , Danielle Albers Szafir , Jinwook Seo

In astronomy and cosmology, significant effort is devoted to characterizing and understanding spatial cross-correlations between points - e.g. galaxy positions, high energy neutrino arrival directions, X-ray and AGN sources, and continuous…

Cosmology and Nongalactic Astrophysics · Physics 2023-01-11 Arka Banerjee , Tom Abel

This paper presents the HiPart package, an open-source native python library that provides efficient and interpret-able implementations of divisive hierarchical clustering algorithms. HiPart supports interactive visualizations for the…

Machine Learning · Statistics 2023-05-02 Panagiotis Anagnostou , Sotiris Tasoulis , Vassilis Plagianakos , Dimitris Tasoulis

In a standard cluster analysis, such as k-means, in addition to clusters locations and distances between them, it's important to know if they are connected or well separated from each other. The main focus of this paper is discovering the…

Machine Learning · Statistics 2017-05-22 Evgeny Bauman , Konstantin Bauman

Time series clustering promises to uncover hidden structural patterns in data with applications across healthcare, finance, industrial systems, and other critical domains. However, without validated ground truth information, researchers…

Machine Learning · Computer Science 2025-05-21 Isabella Degen , Zahraa S Abdallah , Henry W J Reeve , Kate Robson Brown

Datasets in high-dimension do not typically form clusters in their original space; the issue is worse when the number of points in the dataset is small. We propose a low-computation method to find statistically significant clustering…

Machine Learning · Statistics 2020-08-24 Alden Bradford , Tarun Yellamraju , Mireille Boutin

Clustering is one of the most fundamental problems in data analysis and it has been studied extensively in the literature. Though many clustering algorithms have been proposed, clustering theories that justify the use of these clustering…

Machine Learning · Computer Science 2016-02-22 Cheng-Shang Chang , Wanjiun Liao , Yu-Sheng Chen , Li-Heng Liou

The C-Band All-Sky Survey (C-BASS) is an all-sky full-polarization survey at a frequency of 5 GHz, designed to provide data complementary to the all-sky surveys of WMAP and Planck and future CMB B-mode polarization imaging surveys. We…

Instrumentation and Methods for Astrophysics · Physics 2019-02-22 M. A. Stevenson , T. J. Pearson , Michael E. Jones , C. J. Copley , C. Dickinson , J. J. John , O. G. King , S. J. C. Muchovej , Angela C. Taylor

A $k$-decision tree $t$ (or $k$-tree) is a recursive partition of a matrix (2D-signal) into $k\geq 1$ block matrices (axis-parallel rectangles, leaves) where each rectangle is assigned a real label. Its regression or classification loss to…

Machine Learning · Computer Science 2021-10-08 Ibrahim Jubran , Ernesto Evgeniy Sanches Shayda , Ilan Newman , Dan Feldman

We examine the three-dimensional clustering of C IV absorption-line systems, using an extensive catalog of QSO heavy-element absorbers drawn from the literature. We measure clustering by a volume-weighted integral of the correlation…

Astrophysics · Physics 2007-05-23 Ji Meng Loh , Jean M. Quashnock , Michael L. Stein