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Solving complex classification tasks using deep neural networks typically requires large amounts of annotated data. However, corresponding class labels are noisy when provided by error-prone annotators, e.g., crowdworkers. Training standard…

Machine Learning · Computer Science 2023-10-25 Marek Herde , Denis Huseljic , Bernhard Sick

Self-supervised learning (SSL) has proven to be a powerful approach for extracting biologically meaningful representations from single-cell data. To advance our understanding of SSL methods applied to single-cell data, we present…

Quantitative Methods · Quantitative Biology 2025-06-13 Olga Ovcharenko , Florian Barkmann , Philip Toma , Imant Daunhawer , Julia Vogt , Sebastian Schelter , Valentina Boeva

Real-world domain experts (e.g., doctors) rarely annotate only a decision label in their day-to-day workflow without providing explanations. Yet, existing low-resource learning techniques, such as Active Learning (AL), that aim to support…

Computation and Language · Computer Science 2023-10-24 Bingsheng Yao , Ishan Jindal , Lucian Popa , Yannis Katsis , Sayan Ghosh , Lihong He , Yuxuan Lu , Shashank Srivastava , Yunyao Li , James Hendler , Dakuo Wang

Although speech emotion recognition (SER) has advanced significantly with deep learning, annotation remains a major hurdle. Human annotation is not only costly but also subject to inconsistencies annotators often have different preferences…

Artificial Intelligence · Computer Science 2025-06-02 Xin Jing , Jiadong Wang , Iosif Tsangko , Andreas Triantafyllopoulos , Björn W. Schuller

Large Language Models (LLMs) often produce answers with a single chain-of-thought, which restricts their ability to explore reasoning paths or self-correct flawed outputs in complex tasks. In this paper, we introduce MALT (Multi-Agent LLM…

Single-cell RNA-seq (scRNA-seq) enables atlas-scale profiling of complex tissues, revealing rare lineages and transient states. Yet, assigning biologically valid cell identities remains a bottleneck because markers are tissue- and…

Single-cell RNA sequencing has transformed biology by enabling the measurement of gene expression at cellular resolution, providing information for cell types, states, and disease contexts. Recently, single-cell foundation models have…

Machine Learning · Computer Science 2025-10-13 Oussama Kharouiche , Aris Markogiannakis , Xiao Fei , Michail Chatzianastasis , Michalis Vazirgiannis

We present PRINCIPLE-BASED PROMPTING, a simple but effective multi-agent prompting strategy for text classification. It first asks multiple LLM agents to independently generate candidate principles based on analysis of demonstration samples…

Computation and Language · Computer Science 2025-02-12 Peipei Wei , Dimitris Dimitriadis , Yan Xu , Mingwei Shen

Large language models (LLMs) have emerged as powerful tools for natural language table reasoning, where there are two main categories of methods. Prompt-based approaches rely on language-only inference or one-pass program generation without…

Databases · Computer Science 2026-02-17 Zhizhao Luo , Zhaojing Luo , Meihui Zhang , Rui Mao

Business documents often contain substantial tabular and textual information with numerical values, requiring mathematical reasoning for effective document understanding. While Small Language Models (SLMs) still struggle at this task,…

Machine Learning · Computer Science 2025-08-22 Vishnou Vinayagame , Gregory Senay , Luis Martí

Previous work has demonstrated that AI methods for analysing scientific literature benefit significantly from annotating sentences in papers according to their rhetorical roles, such as research gaps, results, limitations, extensions of…

Computation and Language · Computer Science 2026-02-11 Francisco Bolaños , Angelo Salatino , Francesco Osborne , Enrico Motta

Tabular anomaly detection is often handled by single detectors or static ensembles, even though strong performance on tabular data typically comes from heterogeneous model families (e.g., tree ensembles, deep tabular networks, and tabular…

Machine Learning · Computer Science 2026-02-17 Pinqiao Wang , Sheng Li

Large language models (LLMs) are reshaping automated fact-checking (AFC) by enabling unified, end-to-end verification pipelines rather than isolated components. While large proprietary models achieve strong performance, their closed…

Computation and Language · Computer Science 2026-01-19 Malin Astrid Larsson , Harald Fosen Grunnaleite , Vinay Setty

Many machine learning tasks -- particularly those in affective computing -- are inherently subjective. When asked to classify facial expressions or to rate an individual's attractiveness, humans may disagree with one another, and no single…

Machine Learning · Computer Science 2022-11-24 Aneesha Sampath , Victoria Lin , Louis-Philippe Morency

Most existing prompting methods suffer from the issues of generalizability and consistency, as they often rely on instance-specific solutions that may not be applicable to other instances and lack task-level consistency across the selected…

Computation and Language · Computer Science 2024-11-12 Chang Gao , Haiyun Jiang , Deng Cai , Shuming Shi , Wai Lam

Generative large language models (LLMs) can be a powerful tool for augmenting text annotation procedures, but their performance varies across annotation tasks due to prompt quality, text data idiosyncrasies, and conceptual difficulty.…

Computation and Language · Computer Science 2023-06-02 Nicholas Pangakis , Samuel Wolken , Neil Fasching

Human annotation of training samples is expensive, laborious, and sometimes challenging, especially for Natural Language Processing (NLP) tasks. To reduce the labeling cost and enhance the sample efficiency, Active Learning (AL) technique…

Computation and Language · Computer Science 2024-01-17 Xuesong Wang

Textual data annotation, the process of labeling or tagging text with relevant information, is typically costly, time-consuming, and labor-intensive. While large language models (LLMs) have demonstrated their potential as direct…

Computation and Language · Computer Science 2025-08-12 Yu-Min Tseng , Wei-Lin Chen , Chung-Chi Chen , Hsin-Hsi Chen

The conventional Retrieval-Augmented Generation (RAG) paradigm of injecting raw retrieved texts into the Large Language Model (LLM)'s context often results in suboptimal integration of retrieved information. This paper proposes to bridge…

Computation and Language · Computer Science 2026-05-05 Sangkwon Park , Donghun Kang , Jisoo Mok , Sungroh Yoon

Reliable evaluation is essential for developing and deploying large language models, yet in practice it often requires substantial manual effort: practitioners must identify appropriate benchmarks, reproduce heterogeneous evaluation…

Computation and Language · Computer Science 2026-03-11 Chengyu Shen , Yanheng Hou , Minghui Pan , Runming He , Zhen Hao Wong , Meiyi Qiang , Zhou Liu , Hao Liang , Peichao Lai , Zeang Sheng , Wentao Zhang