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Machine learning (ML) approaches have been used to develop highly accurate and efficient applications in many fields including bio-medical science. However, even with advanced ML techniques, cancer classification using gene expression data…

Genomics · Quantitative Biology 2023-05-10 Mahmood Khalsan , Mu Mu , Eman Salih Al-Shamery , Lee Machado , Suraj Ajit , Michael Opoku Agyeman

The Graph Convolutional Networks (GCNs) have achieved excellent results in node classification tasks, but the model's performance at low label rates is still unsatisfactory. Previous studies in Semi-Supervised Learning (SSL) for graph have…

Machine Learning · Computer Science 2023-11-30 Shuhao Shi , Jian Chen , Kai Qiao , Shuai Yang , Linyuan Wang , Bin Yan

Recognizing objects and scenes are two challenging but essential tasks in image understanding. In particular, the use of RGB-D sensors in handling these tasks has emerged as an important area of focus for better visual understanding.…

Computer Vision and Pattern Recognition · Computer Science 2022-01-12 Ali Caglayan , Nevrez Imamoglu , Ahmet Burak Can , Ryosuke Nakamura

Even with the luxury of having abundant data, multi-label classification is widely known to be a challenging task to address. This work targets the problem of multi-label meta-learning, where a model learns to predict multiple labels within…

Computer Vision and Pattern Recognition · Computer Science 2021-10-27 Christian Simon , Piotr Koniusz , Mehrtash Harandi

Sequential identity consistency under precise transient attribute control remains a long-standing challenge in controllable visual storytelling. Existing datasets lack sufficient fidelity and fail to disentangle stable identities from…

Computer Vision and Pattern Recognition · Computer Science 2025-12-08 Xingxi Yin , Yicheng Li , Gong Yan , Chenglin Li , Jian Zhao , Cong Huang , Yue Deng , Yin Zhang

The revolutionary progress in development of next-generation sequencing (NGS) technologies has made it possible to deliver accurate genomic information in a timely manner. Over the past several years, NGS has transformed biomedical and…

Genomics · Quantitative Biology 2024-03-07 Liya Popova , Valerie J. Carabetta

In the semi-supervised setting where labeled data are largely limited, it remains to be a big challenge for message passing based graph neural networks (GNNs) to learn feature representations for the nodes with the same class label that is…

Machine Learning · Computer Science 2023-05-09 Acong Zhang , Ping Li , Guanrong Chen

We consider the problem of training robust and accurate deep neural networks (DNNs) when subject to various proportions of noisy labels. Large-scale datasets tend to contain mislabeled samples that can be memorized by DNNs, impeding the…

Machine Learning · Computer Science 2021-07-07 Yong Wen , Marcus Kalander , Chanfei Su , Lujia Pan

An increasing number of public datasets have shown a transformative impact on automated medical segmentation. However, these datasets are often with varying label quality, ranging from manual expert annotations to AI-generated…

Computer Vision and Pattern Recognition · Computer Science 2024-06-04 Yixiong Chen , Zongwei Zhou , Alan Yuille

Predicting gene function from its DNA sequence is a fundamental challenge in biology. Many deep learning models have been proposed to embed DNA sequences and predict their enzymatic function, leveraging information in public databases…

This study investigates the application of machine learning (ML) models for classifying dental providers into two categories - standard rendering providers and safety net clinic (SNC) providers - using a 2018 dataset of 24,300 instances…

Different from deep neural networks for non-graph data classification, graph neural networks (GNNs) leverage the information exchange between nodes (or samples) when representing nodes. The category distribution shows an imbalance or even a…

Machine Learning · Computer Science 2021-10-19 Rui Wang , Weixuan Xiong , Qinghu Hou , Ou Wu

Predicting protein secondary structure is a fundamental problem in protein structure prediction. Here we present a new supervised generative stochastic network (GSN) based method to predict local secondary structure with deep hierarchical…

Quantitative Methods · Quantitative Biology 2014-03-07 Jian Zhou , Olga G. Troyanskaya

In this paper, a robust weighted score for unbalanced data (ROWSU) is proposed for selecting the most discriminative feature for high dimensional gene expression binary classification with class-imbalance problem. The method addresses one…

Machine Learning · Statistics 2024-01-24 Zardad Khan , Amjad Ali , Saeed Aldahmani

In this dissertation, we present a generative model to capture the relation between facial image quality features (like pose, illumination direction, etc) and face recognition performance. Such a model can be used to predict the performance…

Computer Vision and Pattern Recognition · Computer Science 2015-10-27 Abhishek Dutta

Real networks exhibit nontrivial topological features such as heavy-tailed degree distribution, high clustering, and small-worldness. Researchers have developed several generative models for synthesizing artificial networks that are…

Social and Information Networks · Computer Science 2014-02-04 Sadegh Motallebi , Sadegh Aliakbary , Jafar Habibi

Time series classification (TSC), the problem of predicting class labels of time series, has been around for decades within the community of data mining and machine learning, and found many important applications such as biomedical…

Computer Vision and Pattern Recognition · Computer Science 2016-05-12 Zhicheng Cui , Wenlin Chen , Yixin Chen

Data of sequential nature arise in many application domains in forms of, e.g. textual data, DNA sequences, and software execution traces. Different research disciplines have developed methods to learn sequence models from such datasets: (i)…

Machine Learning · Statistics 2018-11-02 Niek Tax , Irene Teinemaa , Sebastiaan J. van Zelst

Representational harms in language technologies often occur in short spans within otherwise neutral text, where phrases may simultaneously convey generalizations, unfairness, or stereotypes. Framing bias detection as sentence-level…

Computation and Language · Computer Science 2025-09-17 Maximus Powers , Shaina Raza , Alex Chang , Rehana Riaz , Umang Mavani , Harshitha Reddy Jonala , Ansh Tiwari , Hua Wei

The high-content image-based assay is commonly leveraged for identifying the phenotypic impact of genetic perturbations in biology field. However, a persistent issue remains unsolved during experiments: the interferential technical noise…

Image and Video Processing · Electrical Eng. & Systems 2022-12-09 Sen Yang , Tao Shen , Yuqi Fang , Xiyue Wang , Jun Zhang , Wei Yang , Junzhou Huang , Xiao Han