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Background: Trace quantities of contaminating DNA are widespread in the laboratory environment, but their presence has received little attention in the context of high throughput sequencing. This issue is highlighted by recent works that…

Genomics · Quantitative Biology 2015-06-18 Richard W Lusk

Computational analysis methods including machine learning have a significant impact in the fields of genomics and medicine. High-throughput gene expression analysis methods such as microarray technology and RNA sequencing produce enormous…

Genomics · Quantitative Biology 2022-09-28 Nikita Bhandari , Rahee Walambe , Ketan Kotecha , Satyajeet Khare

Modern computer vision foundation models are trained on massive amounts of data, incurring large economic and environmental costs. Recent research has suggested that improving data quality can significantly reduce the need for data…

Computer Vision and Pattern Recognition · Computer Science 2023-11-08 Benjamin Feuer , Chinmay Hegde

Poor data quality limits the advantageous power of Machine Learning (ML) and weakens high-performing ML software systems. Nowadays, data are more prone to the risk of poor quality due to their increasing volume and complexity. Therefore,…

Machine Learning · Computer Science 2025-02-20 Manal Rahal , Bestoun S. Ahmed , Gergely Szabados , Torgny Fornstedt , Jorgen Samuelsson

Morphologies of red blood cells are normally interpreted by a pathologist. It is time-consuming and laborious. Furthermore, a misclassified red blood cell morphology will lead to false disease diagnosis and improper treatment. Thus, a…

Image and Video Processing · Electrical Eng. & Systems 2025-02-06 Kitsuchart Pasupa , Supawit Vatathanavaro , Suchat Tungjitnob

In representation learning on the graph-structured data, under heterophily (or low homophily), many popular GNNs may fail to capture long-range dependencies, which leads to their performance degradation. To solve the above-mentioned issue,…

Machine Learning · Computer Science 2021-06-29 Mengying Jiang , Guizhong Liu , Yuanchao Su , Xinliang Wu

Biological oscillations are periodic changes in various signaling processes crucial for the proper functioning of living organisms. These oscillations are modeled by ordinary differential equations, with coefficient variations leading to…

Machine Learning · Computer Science 2024-12-04 Heng Rao , Yu Gu , Jason Zipeng Zhang , Ge Yu , Yang Cao , Minghan Chen

Feature selection (FS) is an important research topic in machine learning. Usually, FS is modelled as a+ bi-objective optimization problem whose objectives are: 1) classification accuracy; 2) number of features. One of the main issues in…

Artificial Intelligence · Computer Science 2021-04-21 Yu Xue , Yihang Tang , Xin Xu , Jiayu Liang , Ferrante Neri

The definition of a concise and effective testbed for Genetic Programming (GP) is a recurrent matter in the research community. This paper takes a new step in this direction, proposing a different approach to measure the quality of the…

Neural and Evolutionary Computing · Computer Science 2018-05-29 Luiz Otavio Vilas Boas Oliveira , Joao Francisco Barreto da Silva Martins , Luis Fernando Miranda , Gisele Lobo Pappa

Meta learning generalizes the empirical experience with different learning tasks and holds promise for providing important empirical insight into the behaviour of machine learning algorithms. In this paper, we present a comprehensive…

Machine Learning · Computer Science 2021-06-30 Jasmin Bogatinovski , Ljupčo Todorovski , Sašo Džeroski , Dragi Kocev

Feature selection aims to identify the most pattern-discriminative feature subset. In prior literature, filter (e.g., backward elimination) and embedded (e.g., Lasso) methods have hyperparameters (e.g., top-K, score thresholding) and tie to…

Machine Learning · Computer Science 2024-03-07 Wangyang Ying , Dongjie Wang , Haifeng Chen , Yanjie Fu

Machine learning methods are used to discover complex nonlinear relationships in biological and medical data. However, sophisticated learning models are computationally unfeasible for data with millions of features. Here we introduce the…

The quality of a face crop in an image is decided by many factors such as camera resolution, distance, and illumination condition. This makes the discrimination of face images with different qualities a challenging problem in realistic…

Computer Vision and Pattern Recognition · Computer Science 2025-10-07 Youzhe Song , Feng Wang

Image classification has become a ubiquitous task. Models trained on good quality data achieve accuracy which in some application domains is already above human-level performance. Unfortunately, real-world data are quite often degenerated…

Computer Vision and Pattern Recognition · Computer Science 2022-08-17 Stanisław Kaźmierczak , Jacek Mańdziuk

Recently, intermediate feature maps of pre-trained convolutional neural networks have shown significant perceptual quality improvements, when they are used in the loss function for training new networks. It is believed that these features…

Computer Vision and Pattern Recognition · Computer Science 2020-07-24 Taimoor Tariq , Okan Tarhan Tursun , Munchurl Kim , Piotr Didyk

Given a set of data, biclustering aims at finding simultaneous partitions in biclusters of its samples and of the features which are used for representing the samples. Consistent biclusterings allow to obtain correct classifications of the…

Machine Learning · Computer Science 2010-03-18 Antonio Mucherino , Sonia Cafieri

Global Navigation Satellite System (GNSS) signals are subject to different kinds of events causing significant errors in positioning. This work explores the application of Machine Learning (ML) methods of anomaly detection applied to GNSS…

Signal Processing · Electrical Eng. & Systems 2019-11-07 Evgenii Munin , Antoine Blais , Nicolas Couellan

Inferring the structure of gene regulatory networks (GRN) from gene expression data has many applications, from the elucidation of complex biological processes to the identification of potential drug targets. It is however a notoriously…

Machine Learning · Statistics 2012-05-08 Anne-Claire Haury , Fantine Mordelet , Paola Vera-Licona , Jean-Philippe Vert

Multi-sequence MRIs can be necessary for reliable diagnosis in clinical practice due to the complimentary information within sequences. However, redundant information exists across sequences, which interferes with mining efficient…

Computer Vision and Pattern Recognition · Computer Science 2023-02-02 Luyi Han , Tao Tan , Tianyu Zhang , Yunzhi Huang , Xin Wang , Yuan Gao , Jonas Teuwen , Ritse Mann

Network Intrusion Detection System is a critical means of ensuring cybersecurity. However, existing Genetic Algorithm-based feature selection methods face several limitations when dealing with high-dimensional redundant traffic features.…

Neural and Evolutionary Computing · Computer Science 2026-05-20 Chunzhen Li