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Next-generation sequencing technologies provide a revolutionary tool for generating gene expression data. Starting with a fixed RNA sample, they construct a library of millions of differentially abundant short sequence tags or "reads",…

Quantitative Methods · Quantitative Biology 2014-05-13 Dimitrios V. Vavoulis , Julian Gough

This paper targets on the problem of set to set recognition, which learns the metric between two image sets. Images in each set belong to the same identity. Since images in a set can be complementary, they hopefully lead to higher accuracy…

Computer Vision and Pattern Recognition · Computer Science 2017-04-12 Yu Liu , Junjie Yan , Wanli Ouyang

Gene expression datasets are usually of high dimensionality and therefore require efficient and effective methods for identifying the relative importance of their attributes. Due to the huge size of the search space of the possible…

Machine Learning · Computer Science 2022-06-10 Fernando Jiménez , Gracia Sánchez , José Palma , Luis Miralles-Pechuán , Juan Botía

A key task of data science is to identify relevant features linked to certain output variables that are supposed to be modeled or predicted. To obtain a small but meaningful model, it is important to find stochastically independent…

Methodology · Statistics 2021-12-23 Tim Breitenbach , Lauritz Rasbach , Chunguang Liang , Patrick Jahnke

Research on Offline Handwritten Signature Verification explored a large variety of handcrafted feature extractors, ranging from graphology, texture descriptors to interest points. In spite of advancements in the last decades, performance of…

Computer Vision and Pattern Recognition · Computer Science 2017-05-17 Luiz G. Hafemann , Robert Sabourin , Luiz S. Oliveira

Recently introduced generative adversarial network (GAN) has been shown numerous promising results to generate realistic samples. The essential task of GAN is to control the features of samples generated from a random distribution. While…

Machine Learning · Computer Science 2019-04-02 Minhyeok Lee , Junhee Seok

Identifying potential abuses of human rights through imagery is a novel and challenging task in the field of computer vision, that will enable to expose human rights violations over large-scale data that may otherwise be impossible. While…

Computer Vision and Pattern Recognition · Computer Science 2018-05-15 Grigorios Kalliatakis , Shoaib Ehsan , Ales Leonardis , Klaus McDonald-Maier

Next Generation Sequencing (NGS) technology has resulted in massive amounts of proteomics and genomics data. This data is of no use if it is not properly analyzed. ETL (Extraction, Transformation, Loading) is an important step in designing…

Databases · Computer Science 2017-07-25 Shahzad Ahmed , M. Usman Ali , Javed Ferzund , Muhammad Atif Sarwar , Abbas Rehman , Atif Mehmood

The use of learning-based techniques to achieve automated software vulnerability detection has been of longstanding interest within the software security domain. These data-driven solutions are enabled by large software vulnerability…

Software Engineering · Computer Science 2023-01-16 Roland Croft , M. Ali Babar , Mehdi Kholoosi

In the relentless efforts in enhancing medical diagnostics, the integration of state-of-the-art machine learning methodologies has emerged as a promising research area. In molecular biology, there has been an explosion of data generated…

Machine Learning · Computer Science 2024-05-17 Ibrahim Al-Hurani , Abedalrhman Alkhateeb , Salama Ikki

Many promising approaches to symbolic regression have been presented in recent years, yet progress in the field continues to suffer from a lack of uniform, robust, and transparent benchmarking standards. In this paper, we address this…

Neural and Evolutionary Computing · Computer Science 2021-08-02 William La Cava , Patryk Orzechowski , Bogdan Burlacu , Fabrício Olivetti de França , Marco Virgolin , Ying Jin , Michael Kommenda , Jason H. Moore

Genome and metagenome comparisons based on large amounts of next-generation sequencing (NGS) data pose significant challenges for alignment-based approaches due to the huge data size and the relatively short length of the reads.…

Quantitative Methods · Quantitative Biology 2018-03-28 Jie Ren , Xin Bai , Yang Young Lu , Kujin Tang , Ying Wang , Gesine Reinert , Fengzhu Sun

Feature selection in noisy label scenarios remains an understudied topic. We propose a novel genetic algorithm-based approach, the Noise-Aware Multi-Objective Feature Selection Genetic Algorithm (NMFS-GA), for selecting optimal feature…

Machine Learning · Computer Science 2025-09-30 Vandad Imani , Elaheh Moradi , Carlos Sevilla-Salcedo , Vittorio Fortino , Jussi Tohka

This paper looks into the problem of handling imbalanced data in a multi-label classification problem. The problem is solved by proposing two novel methods that primarily exploit the geometric relationship between the feature vectors. The…

Machine Learning · Computer Science 2020-10-13 Anima Majumder , Samrat Dutta , Swagat Kumar , Laxmidhar Behera

Learning from many real-world datasets is limited by a problem called the class imbalance problem. A dataset is imbalanced when one class (the majority class) has significantly more samples than the other class (the minority class). Such…

Machine Learning · Computer Science 2017-11-30 Soroush Saryazdi , Bahareh Nikpour , Hossein Nezamabadi-pour

Genetic variants (GVs) are defined as differences in the DNA sequences among individuals and play a crucial role in diagnosing and treating genetic diseases. The rapid decrease in next generation sequencing cost has led to an exponential…

Machine Learning · Computer Science 2024-12-06 Zehui Li , Vallijah Subasri , Guy-Bart Stan , Yiren Zhao , Bo Wang

In existing visual representation learning tasks, deep convolutional neural networks (CNNs) are often trained on images annotated with single tags, such as ImageNet. However, a single tag cannot describe all important contents of one image,…

Computer Vision and Pattern Recognition · Computer Science 2020-02-11 Baoyuan Wu , Weidong Chen , Yanbo Fan , Yong Zhang , Jinlong Hou , Jie Liu , Tong Zhang

Self-supervised learning (SSL) has shown impressive results in downstream classification tasks. However, there is limited work in understanding their failure modes and interpreting their learned representations. In this paper, we study the…

Machine Learning · Computer Science 2023-12-14 Neha Kalibhat , Kanika Narang , Hamed Firooz , Maziar Sanjabi , Soheil Feizi

The existence of noisy data is prevalent in both the training and testing phases of machine learning systems, which inevitably leads to the degradation of model performance. There have been plenty of works concentrated on learning with…

Machine Learning · Computer Science 2021-08-26 Zhi-Fan Wu , Tong Wei , Jianwen Jiang , Chaojie Mao , Mingqian Tang , Yu-Feng Li

Machine learning offers potential solutions to current issues in industrial systems in areas such as quality control and predictive maintenance, but also faces unique barriers in industrial applications. An ongoing challenge is extreme…

Machine Learning · Computer Science 2026-01-15 Lesley Wheat , Martin v. Mohrenschildt , Saeid Habibi