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Large Language Models (LLMs), benefiting from the auto-regressive modelling approach performed on massive unannotated texts corpora, demonstrates powerful perceptual and reasoning capabilities. However, as for extending auto-regressive…

Computer Vision and Pattern Recognition · Computer Science 2024-09-24 Tianshuo Peng , Zuchao Li , Lefei Zhang , Hai Zhao , Ping Wang , Bo Du

Recent advancements in biology and chemistry have leveraged multi-modal learning, integrating molecules and their natural language descriptions to enhance drug discovery. However, current pre-training frameworks are limited to two…

Machine Learning · Computer Science 2025-02-05 Teng Xiao , Chao Cui , Huaisheng Zhu , Vasant G. Honavar

Deep generative models have emerged as a powerful tool for learning useful molecular representations and designing novel molecules with desired properties, with applications in drug discovery and material design. However, most existing deep…

Proteins are essential macromolecules defined by their amino acid sequences, which determine their three-dimensional structures and, consequently, their functions in all living organisms. Therefore, generative protein modeling necessitates…

Machine Learning · Computer Science 2024-10-18 Xinyou Wang , Zaixiang Zheng , Fei Ye , Dongyu Xue , Shujian Huang , Quanquan Gu

In recent years, multimodal large language models (MLLMs) have shown remarkable capabilities in tasks like visual question answering and common sense reasoning, while visual perception models have made significant strides in perception…

Computer Vision and Pattern Recognition · Computer Science 2024-06-25 Guanqun Wang , Xinyu Wei , Jiaming Liu , Ray Zhang , Yichi Zhang , Kevin Zhang , Maurice Chong , Shanghang Zhang

Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Traditional physics-based simulation methods often struggle with…

Biomolecules · Quantitative Biology 2025-03-14 Jiarui Lu , Xiaoyin Chen , Stephen Zhewen Lu , Chence Shi , Hongyu Guo , Yoshua Bengio , Jian Tang

While large language models (LLMs) excel at static scientific reasoning, they struggle to model the temporal structure of dynamic physical processes. We present EvoMD-LLM (Evolutionary Molecular Dynamics Large Language Model), a framework…

Artificial Intelligence · Computer Science 2026-05-29 Zhichen Tang , Zhengzheng Dang , Yulin Chen , Jixin Wu , Haiwen Li , Yanming Wang

Seeing clearly with high resolution is a foundation of Large Multimodal Models (LMMs), which has been proven to be vital for visual perception and reasoning. Existing works usually employ a straightforward resolution upscaling method, where…

Computer Vision and Pattern Recognition · Computer Science 2024-06-17 Yi-Fan Zhang , Qingsong Wen , Chaoyou Fu , Xue Wang , Zhang Zhang , Liang Wang , Rong Jin

Hyperscaling of data and parameter count in LLMs is yielding diminishing improvement when weighed against training costs, underlining a growing need for more efficient finetuning and inference without sacrificing performance. This is…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Moulik Choraria , Xinbo Wu , Akhil Bhimaraju , Nitesh Sekhar , Yue Wu , Xu Zhang , Prateek Singhal , Lav R. Varshney

The integration of biomolecular modeling with natural language (BL) has emerged as a promising interdisciplinary area at the intersection of artificial intelligence, chemistry and biology. This approach leverages the rich, multifaceted…

Computation and Language · Computer Science 2025-12-01 Qizhi Pei , Zhimeng Zhou , Kaiyuan Gao , Jinhua Zhu , Yue Wang , Zun Wang , Tao Qin , Lijun Wu , Rui Yan

We study why continuous diffusion language models (DLMs) have lagged behind discrete diffusion approaches despite their appealing continuous generative dynamics. Under a controlled token--recovery study, we identify token rounding, the…

Computation and Language · Computer Science 2026-03-04 Junzhe Shen , Jieru Zhao , Ziwei He , Zhouhan Lin

Current Video Large Language Models (Video LLMs) typically encode frames via a vision encoder and employ an autoregressive (AR) LLM for understanding and generation. However, this AR paradigm inevitably faces a dual efficiency bottleneck:…

Computer Vision and Pattern Recognition · Computer Science 2026-01-30 Zhihao He , Tieyuan Chen , Kangyu Wang , Ziran Qin , Yang Shao , Chaofan Gan , Shijie Li , Zuxuan Wu , Weiyao Lin

Current SMILES-based diffusion models for molecule generation typically support only unimodal constraint. They inject conditioning signals at the start of the training process and require retraining a new model from scratch whenever the…

Machine Learning · Computer Science 2025-08-21 Yunzhe Zhang , Yifei Wang , Khanh Vinh Nguyen , Pengyu Hong

Accurate beam prediction is a key enabler for next-generation wireless communication systems. In this paper, we propose a multimodal large language model (LLM)-based beam prediction framework that effectively utilizes contextual…

Signal Processing · Electrical Eng. & Systems 2026-03-24 Tianhao Mao , Le Liang , Jie Yang , Xiao Li , Shi Jin , Geoffrey Ye Li

Goal-oriented de novo molecule design, namely generating molecules with specific property or substructure constraints, is a crucial yet challenging task in drug discovery. Existing methods, such as Bayesian optimization and reinforcement…

Computational Engineering, Finance, and Science · Computer Science 2025-02-28 Chuanliu Fan , Ziqiang Cao , Zicheng Ma , Nan Yu , Yimin Peng , Jun Zhang , Yiqin Gao , Guohong Fu

The advancement of Multimodal Large Language Models (MLLMs) has greatly accelerated the development of applications in understanding integrated texts and images. Recent works leverage image-caption datasets to train MLLMs, achieving…

Computation and Language · Computer Science 2024-11-22 Mingxu Tao , Quzhe Huang , Kun Xu , Liwei Chen , Yansong Feng , Dongyan Zhao

Multimodal recommendation enhances accuracy by leveraging visual and textual signals, and its success largely depends on learning high-quality cross-modal representations. Recent advances in Large Vision-Language Models (LVLMs) offer…

Information Retrieval · Computer Science 2026-04-28 Zhongtao Rao , Peilin Zhou , Dading Chong , Zhiwei Chen , Shoujin Wang , Nan Tang

Large language models have achieved remarkable success under the autoregressive paradigm, yet high-quality text generation need not be tied to a fixed left-to-right order. Existing alternatives still struggle to jointly achieve generation…

Computation and Language · Computer Science 2026-05-08 Hongcan Guo , Qinyu Zhao , Yian Zhao , Shen Nie , Rui Zhu , Qiushan Guo , Feng Wang , Tao Yang , Hengshuang Zhao , Guoqiang Wei , Yan Zeng

The challenge of Multimodal Deformable Image Registration (MDIR) lies in the conversion and alignment of features between images of different modalities. Generative models (GMs) cannot retain the necessary information enough from the source…

Computer Vision and Pattern Recognition · Computer Science 2024-08-21 Mingrui Ma , Weijie Wang , Jie Ning , Jianfeng He , Nicu Sebe , Bruno Lepri

Models based on machine learning can enable accurate and fast molecular property predictions, which is of interest in drug discovery and material design. Various supervised machine learning models have demonstrated promising performance,…

Machine Learning · Computer Science 2022-12-15 Jerret Ross , Brian Belgodere , Vijil Chenthamarakshan , Inkit Padhi , Youssef Mroueh , Payel Das