Related papers: String Representation in Suffixient Set Size Space
A pair of letters $x$ and $y$ are said to alternate in a word $w$ if, after removing all letters except for the copies of $x$ and $y$ from $w$, the resulting word is of the form $xyxy\ldots$ (of even or odd length) or $yxyx\ldots$ (of even…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
The classic string indexing problem is to preprocess a string $S$ into a compact data structure that supports efficient subsequent pattern matching queries, that is, given a pattern string $P$, report all occurrences of $P$ within $S$. In…
The Burrows-Wheeler transform (BWT) is a reversible transform that converts a string $w$ into another string $\mathsf{BWT}(w)$. The size of the run-length encoded BWT (RLBWT) can be interpreted as a measure of repetitiveness in the class of…
Much research in stringology focuses on structures that can, in a way, ``grasp'' repeats (substrings that occur multiple times) as, for example, the so-called runs, a.k.a. maximal repetitions, compactly describe all tandem repeats. In this…
Given a string $w$, another string $v$ is said to be a subsequence of $w$ if $v$ can be obtained from $w$ by removing some of its letters; on the other hand, $v$ is called an absent subsequence of $w$ if $v$ is not a subsequence of $w$. The…
The Longest Common Subsequence (LCS) Problem asks for the longest sequence of (non-contiguous) matches between two given strings of characters. Using extensive Monte Carlo simulations, we find a finite size scaling law of the form E(L)/N =C…
We study the complexity of the problem of searching for a set of patterns that separate two given sets of strings. This problem has applications in a wide variety of areas, most notably in data mining, computational biology, and in…
The combinatorics of reduced words and commutation classes plays an important role in geometric representation theory. A string polytope is a lattice polytope associated to each reduced word of the longest element $w_0$ in the symmetric…
The field of succinct data structures has flourished over the last 16 years. Starting from the compressed suffix array (CSA) by Grossi and Vitter (STOC 2000) and the FM-index by Ferragina and Manzini (FOCS 2000), a number of generalizations…
This article is a fundamental study in computable measure theory. We use the framework of TTE, the representation approach, where computability on an abstract set X is defined by representing its elements with concrete "names", possibly…
This work describes the principled design of a theoretical framework leading to fast and accurate algorithmic information measures on finite multisets of finite strings by means of compression. One distinctive feature of our approach is to…
A graph $G=(V,E)$ is a \emph{word-representable graph} if there exists a word $W$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $W$ if and only if $(x,y)\in E$ for each $x\neq y$. In this paper we give an effective…
A {\em subsequence} of a word $w$ is a word $u$ that can be obtained by deleting some letters from $w$ while maintaining the relative order of the remaining letters, e.g., $\mathtt{lala}$ is a subsequence of $\mathtt{alfalfa}$. A word, over…
We raise the question of approximating the compressibility of a string with respect to a fixed compression scheme, in sublinear time. We study this question in detail for two popular lossless compression schemes: run-length encoding (RLE)…
Referring expression segmentation (RES), a task that involves localizing specific instance-level objects based on free-form linguistic descriptions, has emerged as a crucial frontier in human-AI interaction. It demands an intricate…
In this paper, we propose a new indexing structure for parameterized strings which we call PLSTs, by generalizing linear-size suffix tries for ordinary strings. Two parameterized strings are said to match if there is a bijection on the…
Large-alphabet strings are common in scenarios such as information retrieval and natural-language processing. The efficient storage and processing of such strings usually introduces several challenges that are not witnessed in…
In this paper, we describe a new type of match between a pattern and a text that aren't necessarily maximal in the query, but still contain useful matching information: locally maximal exact matches (LEMs). There are usually a large amount…
Given a static reference string $R$ and a source string $S$, a relative compression of $S$ with respect to $R$ is an encoding of $S$ as a sequence of references to substrings of $R$. Relative compression schemes are a classic model of…