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Functional connectivity (FC) studies have demonstrated the overarching value of studying the brain and its disorders through the undirected weighted graph of fMRI correlation matrix. Most of the work with the FC, however, depends on the way…

Neurons and Cognition · Quantitative Biology 2021-12-09 Usman Mahmood , Zening Fu , Vince Calhoun , Sergey Plis

Examining task-free functional connectivity (FC) in the human brain offers insights on how spontaneous integration and segregation of information relate to human cognition, and how this organization may be altered in different conditions,…

We introduce LITcoder, an open-source library for building and benchmarking neural encoding models. Designed as a flexible backend, LITcoder provides standardized tools for aligning continuous stimuli (e.g., text and speech) with brain…

Computation and Language · Computer Science 2026-05-05 Taha Binhuraib , Ruimin Gao , Anna A. Ivanova

Neural codes are binary codes that are used for information processing and representation in the brain. In previous work, we have shown how an algebraic structure, called the {\it neural ring}, can be used to efficiently encode geometric…

Neurons and Cognition · Quantitative Biology 2019-02-14 Carina Curto , Nora Youngs

The human brain is a highly efficient processing unit, and understanding how it works can inspire new algorithms and architectures in machine learning. In this work, we introduce a novel framework named Brain Activation Network (BRACTIVE),…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Xuan-Bac Nguyen , Hojin Jang , Xin Li , Samee U. Khan , Pawan Sinha , Khoa Luu

Graph theoretical approach has proved an effective tool to understand, characterize and quantify the complex brain network. However, much less attention has been paid to methods that quantitatively compare two graphs, a crucial issue in the…

Neurons and Cognition · Quantitative Biology 2019-08-29 Ahmad Mheich , Fabrice Wendling , Mahmoud Hassan

Brain decoding aims to reconstruct visual perception of human subject from fMRI signals, which is crucial for understanding brain's perception mechanisms. Existing methods are confined to the single-subject paradigm due to substantial brain…

Computer Vision and Pattern Recognition · Computer Science 2025-02-10 Yuqin Dai , Zhouheng Yao , Chunfeng Song , Qihao Zheng , Weijian Mai , Kunyu Peng , Shuai Lu , Wanli Ouyang , Jian Yang , Jiamin Wu

Traditional functional connectivity based on functional magnetic resonance imaging (fMRI) can only capture pairwise interactions between brain regions. Hypergraphs, which reveal high-order relationships among multiple brain regions, have…

Neurons and Cognition · Quantitative Biology 2025-05-20 Wenqi Hu , Xuerui Su , Guanliang Li , Yidi Pan , Aijing Lin

Recent works show that interactive documents connecting text with visualizations facilitate reading comprehension. However, creating this type of content requires specialized knowledge. We present ChartText, a method that links text with…

Human-Computer Interaction · Computer Science 2022-01-14 Joao Pinheiro , Jorge Poco

Functional connectivity (FC) has been widely used to study brain network interactions underlying the emerging cognition and behavior of an individual. FC is usually defined as the correlation or partial correlation between brain regions.…

Applications · Statistics 2020-10-27 Gemeng Zhang , Aiying Zhang , Biao Cai , Zhuozhuo Tu , Vince D. Calhoun , Yu-Ping Wang

Recent advances in neuroimaging have enabled studies in functional connectivity (FC) of human brain, alongside investigation of the neuronal basis of cognition. One important FC study is the representation of vision in human brain. The…

Neurons and Cognition · Quantitative Biology 2025-10-29 Debanjali Bhattacharya , Neelam Sinha

Citation graph visualisation is a useful tool for contextual awareness in academic research. Unfortunately, existing solutions can suffer from several drawbacks, such as a poor scaling, shallow network traversal, freemium gating, and slow…

Digital Libraries · Computer Science 2025-12-30 Harry Ballington

Medical images used in clinical practice are heterogeneous and not the same quality as scans studied in academic research. Preprocessing breaks down in extreme cases when anatomy, artifacts, or imaging parameters are unusual or protocols…

Image and Video Processing · Electrical Eng. & Systems 2022-08-31 Mostafa Mehdipour Ghazi , Mads Nielsen

Recent advances in neuroimaging along with algorithmic innovations in statistical learning from network data offer a unique pathway to integrate brain structure and function, and thus facilitate revealing some of the brain's organizing…

Signal Processing · Electrical Eng. & Systems 2021-12-21 Yang Li , Gonzalo Mateos , Zhengwu Zhang

This study introduces a pioneering approach in brain-computer interface (BCI) technology, featuring our novel concept of high-level visual imagery for non-invasive electroencephalography (EEG)-based communication. High-level visual imagery,…

Human-Computer Interaction · Computer Science 2025-11-03 Byoung-Hee Kwon , Minji Lee , Seong-Whan Lee

Most neuroimaging experiments are under-powered, limited by the number of subjects and cognitive processes that an individual study can investigate. Nonetheless, over decades of research, neuroscience has accumulated an extensive wealth of…

Neurons and Cognition · Quantitative Biology 2021-09-29 Gia H. Ngo , Minh Nguyen , Nancy F. Chen , Mert R. Sabuncu

Divergent brain connectivity is thought to underlie the behavioral and cognitive symptoms observed in many neurodevelopmental disorders. Quantifying divergence from neurotypical connectivity patterns offers a promising pathway to inform…

Neurons and Cognition · Quantitative Biology 2024-11-19 Rui Sherry Shen , Yusuf Osmanlıoğlu , Drew Parker , Darien Aunapu , Benjamin E. Yerys , Birkan Tunç , Ragini Verma

Using causal relations to guide decision making has become an essential analytical task across various domains, from marketing and medicine to education and social science. While powerful statistical models have been developed for inferring…

Human-Computer Interaction · Computer Science 2020-09-08 Xiao Xie , Fan Du , Yingcai Wu

We study index-based processing for connectivity queries within sliding windows on streaming graphs. These queries, which determine whether two vertices belong to the same connected component, are fundamental operations in real-time graph…

Databases · Computer Science 2024-06-14 Chao Zhang , Angela Bonifati , M. Tamer Özsu

Foundation models are transforming neuroscience but are often prohibitively large, data-hungry, and difficult to deploy. Here, we introduce BrainSymphony, a lightweight and parameter-efficient foundation model with plug-and-play integration…

Quantitative Methods · Quantitative Biology 2026-02-13 Moein Khajehnejad , Forough Habibollahi , Devon Stoliker , Adeel Razi