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The (variational) graph auto-encoder and its variants have been popularly used for representation learning on graph-structured data. While the encoder is often a powerful graph convolutional network, the decoder reconstructs the graph…

Machine Learning · Computer Science 2019-11-27 Han Shi , Haozheng Fan , James T. Kwok

Graph transformers need strong inductive biases to derive meaningful attention scores. Yet, current methods often fall short in capturing longer ranges, hierarchical structures, or community structures, which are common in various graphs…

Machine Learning · Computer Science 2024-05-28 Yuankai Luo , Hongkang Li , Lei Shi , Xiao-Ming Wu

Recently, Transformers for graph representation learning have become increasingly popular, achieving state-of-the-art performance on a wide-variety of graph datasets, either alone or in combination with message-passing graph neural networks…

Machine Learning · Computer Science 2024-05-07 Ayush Garg

End-to-end multimodal learning on knowledge graphs has been left largely unaddressed. Instead, most end-to-end models such as message passing networks learn solely from the relational information encoded in graphs' structure: raw values, or…

Artificial Intelligence · Computer Science 2020-03-30 W. X. Wilcke , P. Bloem , V. de Boer , R. H. van t Veer , F. A. H. van Harmelen

Graph Neural Networks (GNNs) are deep learning methods which provide the current state of the art performance in node classification tasks. GNNs often assume homophily -- neighboring nodes having similar features and labels--, and therefore…

Machine Learning · Computer Science 2021-10-26 Liheng Ma , Reihaneh Rabbany , Adriana Romero-Soriano

The human brain cortical layer has a convoluted morphology that is unique to each individual. Characterization of the cortical morphology is necessary in longitudinal studies of structural brain change, as well as in discriminating…

Computer Vision and Pattern Recognition · Computer Science 2018-10-25 Sevil Maghsadhagh , Mousa Shamsi , Anders Eklund , Hamid Behjat

Localization of a set of nodes is an important and a thoroughly researched problem in robotics and sensor networks. This paper is concerned with the theory of localization from inner-angle measurements. We focus on the challenging case…

Robotics · Computer Science 2020-05-12 Frederike Dümbgen , Majed El Helou , Adam Scholefield

Node embedding is the task of extracting informative and descriptive features over the nodes of a graph. The importance of node embeddings for graph analytics, as well as learning tasks such as node classification, link prediction and…

Machine Learning · Computer Science 2019-06-17 Dimitris Berberidis , Georgios B. Giannakis

We propose a novel benchmarking methodology for graph neural networks (GNNs) based on the graph alignment problem, a combinatorial optimization task that generalizes graph isomorphism by aligning two unlabeled graphs to maximize overlapping…

Machine Learning · Computer Science 2025-05-20 Adrien Lagesse , Marc Lelarge

Positional Encodings (PEs) are essential for injecting structural information into Graph Neural Networks (GNNs), particularly Graph Transformers, yet their empirical impact remains insufficiently understood. We introduce a unified…

Machine Learning · Computer Science 2026-01-15 Florian Grötschla , Jiaqing Xie , Roger Wattenhofer

Learning positional information of nodes in a graph is important for link prediction tasks. We propose a representation of positional information using representative nodes called landmarks. A small number of nodes with high degree…

Artificial Intelligence · Computer Science 2024-04-22 Minsang Kim , Seungjun Baek

We consider a problem of localizing a path-signal that evolves over time on a graph. A path-signal can be viewed as the trajectory of a moving agent on a graph in several consecutive time points. Combining dynamic programming and graph…

Signal Processing · Electrical Eng. & Systems 2018-11-14 Yaoqing Yang , Siheng Chen , Mohammad Ali Maddah-Ali , Pulkit Grover , Soummya Kar , Jelena Kovačević

Graph neural networks (GNN) have shown great advantages in many graph-based learning tasks but often fail to predict accurately for a task-based on sets of nodes such as link/motif prediction and so on. Many works have recently proposed to…

Machine Learning · Computer Science 2022-06-24 Haorui Wang , Haoteng Yin , Muhan Zhang , Pan Li

Graph machine learning has been widely explored in various domains, such as community detection, transaction analysis, and recommendation systems. In these applications, anomaly detection plays an important role. Recently, studies have…

Machine Learning · Computer Science 2025-11-21 Wei Herng Choong , Jixing Liu , Ching-Yu Kao , Philip Sperl

This paper introduces new invariants of rigid vertex graph embeddings by using non-local combinatorial information that is available at each graphical node. The new non-local information that we use in this paper involves parity in the…

Algebraic Topology · Mathematics 2012-07-31 Louis H. Kauffman , Rama Mishra

Graph Transformers are popular neural networks that extend the well-known Transformer architecture to the graph domain. These architectures operate by applying self-attention on graph nodes and incorporating graph structure through the use…

Machine Learning · Computer Science 2025-02-04 Linus Bao , Emily Jin , Michael Bronstein , İsmail İlkan Ceylan , Matthias Lanzinger

Learning graphs from sets of nodal observations represents a prominent problem formally known as graph topology inference. However, current approaches are limited by typically focusing on inferring single networks, and they assume that…

Social and Information Networks · Computer Science 2021-11-17 Samuel Rey , Andrei Buciulea , Madeline Navarro , Santiago Segarra , Antonio G. Marques

Many optimization, inference and learning tasks can be accomplished efficiently by means of decentralized processing algorithms where the network topology (i.e., the graph) plays a critical role in enabling the interactions among…

Multiagent Systems · Computer Science 2020-08-06 Vincenzo Matta , Augusto Santos , Ali H. Sayed

We revisit hierarchical bracketing encodings from a practical perspective in the context of dependency graph parsing. The approach encodes graphs as sequences, enabling linear-time parsing with $n$ tagging actions, and still representing…

Computation and Language · Computer Science 2025-09-12 Ana Ezquerro , Carlos Gómez-Rodríguez , David Vilares

This work provides the first unifying theoretical framework for node (positional) embeddings and structural graph representations, bridging methods like matrix factorization and graph neural networks. Using invariant theory, we show that…

Machine Learning · Computer Science 2020-09-23 Balasubramaniam Srinivasan , Bruno Ribeiro