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The alignment of biological networks has the potential to teach us as much about biology and disease as has sequence alignment. Sequence alignment can be optimally solved in polynomial time. In contrast, network alignment is $NP$-hard,…

Molecular Networks · Quantitative Biology 2016-07-12 Nil Mamano , Wayne Hayes

Solving systems of Boolean equations is a fundamental task in symbolic computation and algebraic cryptanalysis, with wide-ranging applications in cryptography, coding theory, and formal verification. Among existing approaches, the Boolean…

Cryptography and Security · Computer Science 2026-04-21 Minzhong Luo , Yudong Sun , Yin Long

Probabilistic bits (p-bits) offer an energy-efficient hardware abstraction for stochastic optimization; however, existing p-bit-based simulated annealing accelerators suffer from poor scalability and limited support for fully connected…

Hardware Architecture · Computer Science 2026-02-19 Naoya Onizawa , Taiga Kubuta , Duckgyu Shin , Takahiro Hanyu

This paper presents a method called sampling-computation-optimization (SCO) to design batch Bayesian optimization. SCO does not construct new high-dimensional acquisition functions but samples from the existing one-site acquisition function…

Optimization and Control · Mathematics 2022-02-22 Kai Jia , Xiaojun Duan , Zhengming Wang , Liang Yan

This paper proposes distributed algorithms to solve robust convex optimization (RCO) when the constraints are affected by nonlinear uncertainty. We adopt a scenario approach by randomly sampling the uncertainty set. To facilitate the…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-01-16 Keyou You , Roberto Tempo , Pei Xie

Combinatorial optimization has wide applications from industry to natural science. Ising machines bring an emerging computing paradigm for efficiently solving a combinatorial optimization problem by searching a ground state of a given Ising…

Statistical Mechanics · Physics 2024-07-16 Kentaro Ohno , Tatsuhiko Shirai , Nozomu Togawa

This research concerns a type of configuration optimization problems frequently encountered in engineering design and manufacturing, where the envelope volume in space occupied by a number of components needs to be minimized along with…

Computational Engineering, Finance, and Science · Computer Science 2017-06-13 Pei Cao , Zhaoyan Fan , Robert X. Gao , Jiong Tang

Recent demonstrations on specialized benchmarks have reignited excitement for quantum computers, yet whether they can deliver an advantage for practical real-world problems remains an open question. Here, we show that probabilistic…

Any optimization algorithm programming interface can be seen as a black-box function with additional free parameters. In this spirit, simulated annealing (SA) can be implemented in pseudo-code within the dimensions of a single slide with…

Software Engineering · Computer Science 2023-02-27 Rohit Goswami , Ruhila S. , Amrita Goswami , Sonaly Goswami , Debabrata Goswami

Many high dimensional optimization problems can be reformulated into a problem of finding theoptimal state path under an equivalent state space model setting. In this article, we present a general emulation strategy for developing a state…

Methodology · Statistics 2019-11-19 Chencheng Cai , Rong Chen

Variance reduction has been commonly used in stochastic optimization. It relies crucially on the assumption that the data set is finite. However, when the data are imputed with random noise as in data augmentation, the perturbed data set…

Machine Learning · Computer Science 2018-06-11 Shuai Zheng , James T. Kwok

This paper presents an investigation of two search techniques, tabu search (TS) and simulated annealing (SA), to assess their relative merits when applied to engineering design optimisation. Design optimisation problems are generally…

Neural and Evolutionary Computing · Computer Science 2016-05-20 Andy M. Connor , Kristina Shea

In this work we develop theoretical techniques for analysing the performance of the quantum approximate optimization algorithm (QAOA) when applied to random boolean constraint satisfaction problems (CSPs), and use these techniques to…

Quantum Physics · Physics 2024-11-27 Sami Boulebnane , Maria Ciudad-Alañón , Lana Mineh , Ashley Montanaro , Niam Vaishnav

We propose a simple iterative (SI) algorithm for the maxcut problem through fully using an equivalent continuous formulation. It does not need rounding at all and has advantages that all subproblems have explicit analytic solutions, the cut…

Optimization and Control · Mathematics 2024-07-23 Sihong Shao , Dong Zhang , Weixi Zhang

Binary segmentation, which is sequential in nature is thus far the most widely used method for identifying multiple change points in statistical models. Here we propose a top down methodology called arbitrary segmentation that proceeds in a…

Statistics Theory · Mathematics 2019-06-12 Abhishek Kaul , Venkata K Jandhyala , Stergios B Fotopoulos

Stochastic optimization finds a wide range of applications in operations research and management science. However, existing stochastic optimization techniques usually require the information of random samples (e.g., demands in the…

Optimization and Control · Mathematics 2019-04-18 Xi Chen , Qihang Lin , Zizhuo Wang

A challenge in high-dimensional inverse problems is developing iterative solvers to find the accurate solution of regularized optimization problems with low computational cost. An important example is computed tomography (CT) where both…

Numerical Analysis · Mathematics 2024-12-16 Alessandro Perelli , Carola-Bibiane Schonlieb , Matthias J. Ehrhardt

Simulated annealing solves global optimization problems by means of a random walk in a cooling energy landscape based on the objective function and a temperature parameter. However, if the temperature is decreased too quickly, this…

Optimization and Control · Mathematics 2025-04-14 Vincent Molin , Axel Ringh , Moritz Schauer , Akash Sharma

Simulated annealing (SA) attracts more attention among classical heuristic algorithms because the solution of the combinatorial optimization problem can be naturally mapped to the ground state of the Ising Hamiltonian. However, in practical…

Artificial Intelligence · Computer Science 2022-03-28 Yunuo Cen , Debasis Das , Xuanyao Fong

We consider distributed stochastic optimization problems that are solved with master/workers computation architecture. Statistical arguments allow to exploit statistical similarity and approximate this problem by a finite-sum problem, for…

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