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Interactions between neighboring cells are essential for generating or refining patterns in a number of biological systems. We propose a discrete filtering approach to predict how networks of cells modulate spatially varying input signals…

Tissues and Organs · Quantitative Biology 2019-02-14 Melinda Liu Perkins , Murat Arcak

Sparse coding algorithms trained on natural images can accurately predict the features that excite visual cortical neurons, but it is not known whether such codes can be learned using biologically realistic plasticity rules. We have…

Neurons and Cognition · Quantitative Biology 2011-11-01 Joel Zylberberg , Jason Timothy Murphy , Michael Robert DeWeese

The optimal use of resources has motivated the engineering community to employ controlled distribution of material within their structural designs, often relying on cellular and lattice porous structures. In this research work, a…

Materials Science · Physics 2022-07-15 A. E Gomez-Ovalle

This paper presents a brief study on connections on fiber, principal and vector smooth bundles as well as some relations with their curvatures.

Differential Geometry · Mathematics 2022-07-15 Gustavo Amilcar Saldaña Moncada , Gregor Weingart

Cell extrusion is an essential mechanism for controlling cell density in epithelial tissues. Another essential element of epithelia is curvature, which is required to achieve complex shapes, like in the lung or intestine. Here we introduce…

Curvature-sensing and curvature-remodeling proteins are known to reshape cell membranes, and this remodeling event is essential for key biophysical processes such as tubulation, exocytosis, and endocytosis. Curvature-inducing proteins can…

Biological Physics · Physics 2015-10-13 Richard W. Tourdot , N. Ramakrishnan , Ravi Radhakrishnan

A rigorous homogenization theory is derived to describe the effective admittivity of cell suspensions. A new formula is reported for dilute cases that gives the frequency-dependent effective admittivity with respect to the membrane…

Analysis of PDEs · Mathematics 2013-10-07 Habib Ammari , Josselin Garnier , Laure Giovangigli , Wenjia Jing , Jin-Keun Seo

Mechanical cues from the extracellular microenvironment play a central role in regulating the structure, function and fate of living cells. Nevertheless, the precise nature of the mechanisms and processes underlying this crucial cellular…

Biological Physics · Physics 2015-06-23 Ariel Livne , Eran Bouchbinder , Benjamin Geiger

In this article we compute the motive associated to a cellular fibration $\Gamma$ over a smooth scheme $X$ inside Veovodsky's motivic categories. We implement this result to study the motive associated to a $G$-bundle, and additionally to…

Algebraic Geometry · Mathematics 2016-04-05 Somayeh Habibi , Esmail Arasteh Rad

The conformation space of cyclooctane, a ringlike organic molecule comprising eight carbon atoms, is a two-dimensional algebraic variety, which has been studied extensively for more than 90 years. We propose a cell structure representing…

General Topology · Mathematics 2025-02-28 Ulrich Bauer , Fabian Lenzen

Contractile forces exerted on the surrounding extracellular matrix (ECM) lead to the alignment and stretching of constituent fibers within the vicinity of cells. As a consequence, the matrix reorganizes to form thick bundles of aligned…

Cell Behavior · Quantitative Biology 2014-09-23 Abhilash Nair , Brendon M. Baker , Britta Trappmann , Christopher S. Chen , Vivek B. Shenoy

While architecture is recognized as key to the performance of deep neural networks, its precise effect on training dynamics has been unclear due to the confounding influence of data and loss functions. This paper proposed an analytic…

Dynamical Systems · Mathematics 2026-05-01 Jiajie Zhao , Tao Luo , Yaoyu Zhang

The activity of the grid cell population in the medial entorhinal cortex (MEC) of the mammalian brain forms a vector representation of the self-position of the animal. Recurrent neural networks have been proposed to explain the properties…

Neurons and Cognition · Quantitative Biology 2022-11-08 Dehong Xu , Ruiqi Gao , Wen-Hao Zhang , Xue-Xin Wei , Ying Nian Wu

Self-organization through adaptive rewiring of random neural networks generates brain-like topologies comprising modular small-world structures with rich club effects, merely as the product of optimizing the network topology. In the nervous…

Neurons and Cognition · Quantitative Biology 2022-11-04 Jia Li , Ilias Rentzeperis , Cees van Leeuwen

In this paper we propose a neurogeometrical model of the behaviour of cells of the arm area of the primary motor cortex (M1). We will mathematically express as a fiber bundle the hypercolumnar organization of this cortical area, first…

Neurons and Cognition · Quantitative Biology 2023-06-14 Caterina Mazzetti , Alessandro Sarti , Giovanna Citti

The primary visual cortex of many mammals contains a continuous representation of visual space, with a roughly repetitive aperiodic map of orientation preferences superimposed. It was recently found that orientation preference maps (OPMs)…

Neurons and Cognition · Quantitative Biology 2015-03-19 Wolfgang Keil , Fred Wolf

Natural images contain often curvilinear structures, which might be disconnected, or partly occluded. Recovering the missing connection of disconnected structures is an open issue and needs appropriate geometric reasoning. We propose to…

Computer Vision and Pattern Recognition · Computer Science 2017-06-26 Samaneh Abbasi-Sureshjani , Jiong Zhang , Remco Duits , Bart ter Haar Romeny

Many media are divided into elementary units with irregular shape and size, as exemplified by domains in magnetic materials, bubbles in foams, or cells in biological tissues. Such media are essentially characterized by geometrical disorder…

Biological Physics · Physics 2021-04-21 Antoine Fruleux , Arezki Boudaoud

Edge detection (ED) is a fundamental perceptual process in computer vision, forming the structural basis for high-level reasoning tasks such as segmentation, recognition, and scene understanding. Despite substantial progress achieved by…

Computer Vision and Pattern Recognition · Computer Science 2026-02-12 Hao Shu

Cell-cell adhesion is one the most fundamental mechanisms regulating collective cell migration during tissue development, homeostasis and repair, allowing cell populations to self-organize and eventually form and maintain complex tissue…

Cell Behavior · Quantitative Biology 2022-11-16 Carles Falcó , Ruth E. Baker , José A. Carrillo