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In an upward planar 2-slope drawing of a digraph, edges are drawn as straight-line segments in the upward direction without crossings using only two different slopes. We investigate whether a given upward planar digraph admits such a…

Discrete Mathematics · Computer Science 2022-07-06 Jonathan Klawitter , Tamara Mchedlidze

A classification of critical behavior is provided in systems for which the renormalization group equations are control-parameter dependent. It describes phase transitions in networks with a recursive, hierarchical structure but appears to…

Statistical Mechanics · Physics 2015-05-12 Stefan Boettcher , Trent Brunson

Optimal linear-time algorithms for testing the planarity of a graph are well-known for over 35 years. However, these algorithms are quite involved and recent publications still try to give simpler linear-time tests. We give a simple…

Data Structures and Algorithms · Computer Science 2012-02-23 Jens M. Schmidt

Networks constitute efficient tools for assessing universal features of complex systems. In physical contexts, classical as well as quantum, networks are used to describe a wide range of phenomena, such as phase transitions, intricate…

Quantum Physics · Physics 2016-01-22 Jaroslav Novotný , Gernot Alber , Igor Jex

The connections in many networks are not merely binary entities, either present or not, but have associated weights that record their strengths relative to one another. Recent studies of networks have, by and large, steered clear of such…

Statistical Mechanics · Physics 2009-11-10 M. E. J. Newman

We introduce a framework for the modeling of sequential data capturing pathways of varying lengths observed in a network. Such data are important, e.g., when studying click streams in information networks, travel patterns in transportation…

Social and Information Networks · Computer Science 2017-11-20 Ingo Scholtes

Beyond-planarity focuses on the study of geometric and topological graphs that are in some sense nearly-planar. Here, planarity is relaxed by allowing edge crossings, but only with respect to some local forbidden crossing configurations.…

Discrete Mathematics · Computer Science 2017-12-29 Patrizio Angelini , Michael A. Bekos , Michael Kaufmann , Maximilian Pfister , Torsten Ueckerdt

Among all characteristics exhibited by natural and man-made networks the small-world phenomenon is surely the most relevant and popular. But despite its significance, a reliable and comparable quantification of the question `how small is a…

Physics and Society · Physics 2019-11-27 Gorka Zamora-López , Romain Brasselet

We introduce a graph-theoretic approach to extract clusters and hierarchies in complex data-sets in an unsupervised and deterministic manner, without the use of any prior information. This is achieved by building topologically embedded…

Data Analysis, Statistics and Probability · Physics 2014-02-13 Won-Min Song , T. Di Matteo , Tomaso Aste

We consider a variant of so called power-law random graph. A sequence of expected degrees corresponds to a power-law degree distribution with finite mean and infinite variance. In previous works the asymptotic picture with number of nodes…

Probability · Mathematics 2007-12-12 Hannu Reittu , Ilkka Norros

Rooted phylogenetic networks are used by biologists to infer and represent complex evolutionary relationships between species that cannot be accurately explained by a phylogenetic tree. Tree-child networks are a particular class of rooted…

Combinatorics · Mathematics 2024-09-02 Janosch Döcker , Simone Linz

We present a novel topological classification of RNA secondary structures with pseudoknots. It is based on the topological genus of the circular diagram associated to the RNA base-pair structure. The genus is a positive integer number,…

Biomolecules · Quantitative Biology 2007-05-23 Michael Bon , Graziano Vernizzi , Henri Orland , A. Zee

The immersion relation is a partial ordering relation on graphs that is weaker than the topological minor relation in the sense that if a graph $G$ contains a graph $H$ as a topological minor, then it also contains it as an immersion but…

Combinatorics · Mathematics 2012-07-24 Archontia C. Giannopoulou , Marcin Kaminski , Dimitrios M. Thilikos

Hierarchical crack patterns that arise during the drying of thin films of colloidal dispersions or polymer solutions on a solid substrate are of interest both from a fundamental standpoint and in the context of the creation of transparent…

Disordered Systems and Neural Networks · Physics 2026-03-26 Yuri Yu. Tarasevich , Andrei V. Eserkepov , Andrei S. Burmistrov

Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…

Populations and Evolution · Quantitative Biology 2019-11-28 Mareike Fischer , Michelle Galla , Lina Herbst , Yangjing Long , Kristina Wicke

Tensor network methods provide an intuitive graphical language to describe quantum states, channels, open quantum systems and a class of numerical approximation methods that efficiently simulate certain many-body states in one spatial…

Quantum Physics · Physics 2017-03-09 Jacob Biamonte

It was recently shown that a large class of phylogenetic networks, the `labellable' networks, is in bijection with the set of `expanding' covers of finite sets. In this paper, we show how several prominent classes of phylogenetic networks…

Populations and Evolution · Quantitative Biology 2024-04-11 Andrew Francis , Daniele Marchei , Mike Steel

In our recent works, we developed a probabilistic framework for structural analysis in undirected networks. The key idea of that framework is to sample a network by a symmetric bivariate distribution and then use that bivariate distribution…

Social and Information Networks · Computer Science 2015-10-19 Cheng-Shang Chang , Duan-Shin Lee , Li-Heng Liou , Sheng-Min Lu , Mu-Huan Wu

For real application and theoretical investigation of ordinary hypergraphs and non-ordinary hypergraphs, researchers need to establish standard rules and feasible operating methods. We propose a visualization tool for investigating…

History and Overview · Mathematics 2025-03-27 Fei Ma , Bing Yao

We analyse the solutions of networked heterogeneous nonlinear systems. We assume that the closed-loop interconnected systems form a network with an underlying connected directed graph that contains a directed spanning tree. For these…

Optimization and Control · Mathematics 2023-09-25 Anes Lazri , Mohamed Maghenem , Elena Panteley , Antonio Loria