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Advances in neural recording methods enable sampling from populations of thousands of neurons during the performance of behavioral tasks, raising the question of how recorded activity relates to the theoretical models of computations…

Neurons and Cognition · Quantitative Biology 2020-07-01 Audrey J. Sederberg , Ilya Nemenman

The quest to understand structure-function relationships in networks across scientific disciplines has intensified. However, the optimal network architecture remains elusive, particularly for complex information processing. Therefore, we…

Adaptation and Self-Organizing Systems · Physics 2024-03-27 Manish Yadav , Sudeshna Sinha , Merten Stender

Deep feedforward and recurrent rate-based neural networks have become successful functional models of the brain, but they neglect obvious biological details such as spikes and Dale's law. Here we argue that these details are crucial in…

Neurons and Cognition · Quantitative Biology 2023-12-29 William F. Podlaski , Christian K. Machens

Biological neural networks can perform complex computations to predict their environment, far above the limited predictive capabilities of individual neurons. While conventional approaches to understanding these computations often focus on…

Neurons and Cognition · Quantitative Biology 2024-06-28 Hanna M. Tolle , Andrea I Luppi , Anil K. Seth , Pedro A. M. Mediano

Elucidating principles that underlie computation in neural networks is currently a major research topic of interest in neuroscience. Transfer Entropy (TE) is increasingly used as a tool to bridge the gap between network structure, function,…

Neurons and Cognition · Quantitative Biology 2017-06-08 Madhavun Candadai Vasu , Eduardo J. Izquierdo

Reservoir computers (RCs) provide a computationally efficient alternative to deep learning while also offering a framework for incorporating brain-inspired computational principles. By using an internal neural network with random, fixed…

Neural and Evolutionary Computing · Computer Science 2025-04-18 Keshav Srinivasan , Dietmar Plenz , Michelle Girvan

Energy-based models have become a central paradigm for understanding computation and stability in both theoretical neuroscience and machine learning. However, the energetic framework typically relies on symmetry in synaptic or weight…

Neurons and Cognition · Quantitative Biology 2025-12-08 Simone Betteti , William Retnaraj , Alexander Davydov , Jorge Cortés , Francesco Bullo

Information networks are ubiquitous and are ideal for modeling relational data. Networks being sparse and irregular, network embedding algorithms have caught the attention of many researchers, who came up with numerous embeddings algorithms…

Machine Learning · Computer Science 2020-09-25 Junshan Wang , Yilun Jin , Guojie Song , Xiaojun Ma

In this study, we address the challenge of analyzing electrophysiological measurements in neuronal networks. Our computational model, based on the Reservoir Computing Network (RCN) architecture, deciphers spatio-temporal data obtained from…

Quantitative Methods · Quantitative Biology 2025-02-14 Ilya Auslender , Giorgio Letti , Yasaman Heydari , Clara Zaccaria , Lorenzo Pavesi

Excitation-inhibition (E-I) balance is ubiquitously observed in the cortex. Recent studies suggest an intriguing link between balance on fast timescales, tight balance, and efficient information coding with spikes. We further this…

Neurons and Cognition · Quantitative Biology 2021-05-04 Qianyi Li , Cengiz Pehlevan

Reservoirs, typically implemented as recurrent neural networks with fixed random connection weights, can be combined with a simple trained readout layer to perform a wide range of computational tasks. However, increasing the magnitude of…

Neurons and Cognition · Quantitative Biology 2026-04-01 Claus Metzner , Achim Schilling , Andreas Maier , Thomas Kinfe , Patrick Krauss

In this paper we present a computational model which decodes the spatio-temporal data from electro-physiological measurements of neuronal networks and reconstructs the network structure on a macroscopic domain, representing the connectivity…

Quantitative Methods · Quantitative Biology 2025-02-14 Ilya Auslender , Lorenzo Pavesi

Understanding how the dynamics of neural networks is shaped by the computations they perform is a fundamental question in neuroscience. Recently, the framework of efficient coding proposed a theory of how spiking neural networks can compute…

Neurons and Cognition · Quantitative Biology 2022-10-25 Veronika Koren , Stefano Panzeri

Recent Continuous Thought Machine architecture decouples internal computation from external inputs via neural dynamics, but relies on multi-layer perceptrons without stability guarantees. We propose to model neural dynamics using asymmetric…

Machine Learning · Computer Science 2026-05-20 Alexander Kyuroson , Denis Kleyko , Marcus Liwicki

The population model of Wilson-Cowan is perhaps the most popular in the history of computational neuroscience. It embraces the nonlinear mean field dynamics of excitatory and inhibitory neuronal populations provided via a temporal…

Neurons and Cognition · Quantitative Biology 2023-09-13 Maryam Saadati , Saba Sadat Khodaei , Yousef Jamali

The construction of biologically plausible models of neural circuits is crucial for understanding the computational properties of the nervous system. Constructing functional networks composed of separate excitatory and inhibitory neurons…

Disordered Systems and Neural Networks · Physics 2020-07-01 Alessandro Ingrosso , L. F. Abbott

The human brain is a complex dynamical system which displays a wide range of macroscopic and mesoscopic patterns of neural activity, whose mechanistic origin remains poorly understood. Whole-brain modelling allows us to explore candidate…

Neurons and Cognition · Quantitative Biology 2025-04-25 Cristiana Dimulescu , Ronja Strömsdörfer , Agnes Flöel , Klaus Obermayer

The structural complexity of reservoir networks poses a significant challenge, often leading to excessive computational costs and suboptimal performance. In this study, we introduce a systematic, task specific node pruning framework that…

Computational Physics · Physics 2025-08-14 Manish Yadav , Merten Stender

Connectivity structure shapes neural computation, but inferring this structure from population recordings is degenerate: multiple connectivity structures can generate identical dynamics. Recent work uses low-rank recurrent neural networks…

Neurons and Cognition · Quantitative Biology 2026-03-30 Timothy Doyeon Kim , Ulises Pereira-Obilinovic , Yiliu Wang , Eric Shea-Brown , Uygar Sümbül

Individual nodes in evolving real-world networks typically experience growth and decay --- that is, the popularity and influence of individuals peaks and then fades. In this paper, we study this phenomenon via an intrinsic nodal fitness…

Physics and Society · Physics 2015-05-20 Xin-Jian Xu , Xiao-Long Peng , Michael Small , Xin-Chu Fu
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