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Classification is an essential and fundamental task in machine learning, playing a cardinal role in the field of natural language processing (NLP) and computer vision (CV). In a supervised learning setting, labels are always needed for the…

Computation and Language · Computer Science 2021-02-04 Irene Li

We discuss a simple and powerful approach for the ab initio identification of cis-regulatory motifs involved in transcriptional regulation. The method we present integrates several elements: human-mouse comparison, statistical analysis of…

Genomics · Quantitative Biology 2007-05-23 Davide Cora' , Carl Herrmann , Christoph Dieterich , Ferdinando Di Cunto , Paolo Provero , Michele Caselle

Performance of neural network models relies on the availability of large datasets with minimal levels of uncertainty. Transfer Learning (TL) models have been proposed to resolve the issue of small dataset size by letting the model train on…

Quantitatively predicting phenotype variables by the expression changes in a set of candidate genes is of great interest in molecular biology but it is also a challenging task for several reasons. First, the collected biological…

Applications · Statistics 2017-07-21 Emilie Devijver , Mélina Gallopin , Emeline Perthame

In recent years, multi-label classification has attracted a significant body of research, motivated by real-life applications, such as text classification and medical diagnoses. Although sparsely studied in this context, Learning Classifier…

Neural and Evolutionary Computing · Computer Science 2015-12-29 Fani A. Tzima , Miltiadis Allamanis , Alexandros Filotheou , Pericles A. Mitkas

This paper presents a simple and effective approach to solving the multi-label classification problem. The proposed approach leverages Transformer decoders to query the existence of a class label. The use of Transformer is rooted in the…

Computer Vision and Pattern Recognition · Computer Science 2021-07-23 Shilong Liu , Lei Zhang , Xiao Yang , Hang Su , Jun Zhu

Transcription regulation is largely governed by the profile and the dynamics of transcription factors' binding to DNA. Stochastic effects are intrinsic to this dynamics and the binding to functional sites must be controled with a certain…

Genomics · Quantitative Biology 2007-05-23 Erik Aurell , Aymeric Fouquier d'Herouel , Claes Malmnas , Massimo Vergassola

Transcriptional activity has been shown to relate to the organization of chromosomes in the eukaryotic nucleus and in the bacterial nucleoid. In particular, highly transcribed genes, RNA polymerases and transcription factors gather into…

Biological Physics · Physics 2010-05-11 Ivan Junier , Olivier Martin , François Képès

Conditional random fields (CRF) for label decoding has become ubiquitous in sequence labeling tasks. However, the local label dependencies and inefficient Viterbi decoding have always been a problem to be solved. In this work, we introduce…

Computation and Language · Computer Science 2020-12-22 Tao Gui , Jiacheng Ye , Qi Zhang , Zhengyan Li , Zichu Fei , Yeyun Gong , Xuanjing Huang

Survival prediction plays a crucial role in assisting clinicians with the development of cancer treatment protocols. Recent evidence shows that multimodal data can help in the diagnosis of cancer disease and improve survival prediction.…

Image and Video Processing · Electrical Eng. & Systems 2023-11-14 Ruiquan Ge , Xiangyang Hu , Rungen Huang , Gangyong Jia , Yaqi Wang , Renshu Gu , Changmiao Wang , Elazab Ahmed , Linyan Wang , Juan Ye , Ye Li

Convolution neural network is successful in pervasive vision tasks, including label distribution learning, which usually takes the form of learning an injection from the non-linear visual features to the well-defined labels. However, how…

Computer Vision and Pattern Recognition · Computer Science 2024-03-19 Ping Chen , Xingpeng Zhang , Chengtao Zhou , Dichao Fan , Peng Tu , Le Zhang , Yanlin Qian

The task of multi-label image classification is to recognize all the object labels presented in an image. Though advancing for years, small objects, similar objects and objects with high conditional probability are still the main…

Computer Vision and Pattern Recognition · Computer Science 2021-06-14 Xing Cheng , Hezheng Lin , Xiangyu Wu , Fan Yang , Dong Shen , Zhongyuan Wang , Nian Shi , Honglin Liu

Time domain identification is studied in this paper for parameters of a continuous-time multi-input multi-output descriptor system, with these parameters affecting system matrices through a linear fractional transformation. Sampling is…

Multiagent Systems · Computer Science 2025-06-17 Tong Zhou

Early diagnosis of treatable diseases is essential for improving healthcare, and many diseases' onsets are predictable from annual lab tests and their temporal trends. We introduce a multi-resolution convolutional neural network for early…

Machine Learning · Computer Science 2016-03-14 Narges Razavian , David Sontag

Multi-label feature selection serves as an effective mean for dealing with high-dimensional multi-label data. To achieve satisfactory performance, existing methods for multi-label feature selection often require the centralization of…

Machine Learning · Computer Science 2024-08-28 Yukun Song , Dayuan Cao , Jiali Miao , Shuai Yang , Kui Yu

Machine learning on large-scale genomic or transcriptomic data is important for many novel health applications. For example, precision medicine tailors medical treatments to patients on the basis of individual biomarkers, cellular and…

Machine Learning · Computer Science 2025-05-26 Anika Hannemann , Jan Ewald , Leo Seeger , Erik Buchmann

Multi-label learning is a rapidly growing research area that aims to predict multiple labels from a single input data point. In the era of big data, tasks involving multi-label classification (MLC) or ranking present significant and…

Machine Learning · Computer Science 2024-06-27 Adane Nega Tarekegn , Mohib Ullah , Faouzi Alaya Cheikh

Multi-label learning has emerged as a crucial paradigm in data analysis, addressing scenarios where instances are associated with multiple class labels simultaneously. With the growing prevalence of multi-label data across diverse…

Computer Vision and Pattern Recognition · Computer Science 2023-09-27 Sadegh Eskandari , Sahar Ghassabi

Training deep neural networks requires many training samples, but in practice training labels are expensive to obtain and may be of varying quality, as some may be from trusted expert labelers while others might be from heuristics or other…

Machine Learning · Computer Science 2018-05-24 Mostafa Dehghani , Arash Mehrjou , Stephan Gouws , Jaap Kamps , Bernhard Schölkopf

Automatically labeling multiple styles for every song is a comprehensive application in all kinds of music websites. Recently, some researches explore review-driven multi-label music style classification and exploit style correlations for…

Computation and Language · Computer Science 2021-01-12 Qianwen Ma , Chunyuan Yuan , Wei Zhou , Jizhong Han , Songlin Hu