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Reproducibility of computational studies is a hallmark of scientific methodology. It enables researchers to build with confidence on the methods and findings of others, reuse and extend computational pipelines, and thereby drive scientific…

More than ninety percent of published Jupyter notebooks do not state dependencies on external packages. This makes them non-executable and thus hinders reproducibility of scientific results. We present SnifferDog, an approach that 1)…

Software Engineering · Computer Science 2021-03-05 Jiawei Wang , Li Li , Andreas Zeller

Interactive notebooks, such as Jupyter, have revolutionized the field of data science by providing an integrated environment for data, code, and documentation. However, their adoption by robotics researchers and model developers has been…

Computational Engineering, Finance, and Science · Computer Science 2024-05-15 Rolando Garcia

As scientific work becomes more computational and data intensive, research processes and results become more difficult to interpret and reproduce. In this poster, we show how the Jupyter notebook, a tool originally designed as a free…

Digital Libraries · Computer Science 2018-04-17 Bernadette M. Boscoe , Irene V. Pasquetto , Milena S. Golshan , Christine L. Borgman

Jupyter notebooks facilitate the bundling of executable code with its documentation and output in one interactive environment, and they represent a popular mechanism to document and share computational workflows. The reproducibility of…

Digital Libraries · Computer Science 2023-08-16 Sheeba Samuel , Daniel Mietchen

Background. Jupyter notebooks are one of the main tools used by data scientists. Notebooks include features (configuration scripts, markdown, images, etc.) that make them challenging to analyze compared to traditional software. As a result,…

Software Engineering · Computer Science 2025-07-28 Wenyuan Jiang , Diany Pressato , Harsh Darji , Thibaud Lutellier

Jupyter notebooks allow to bundle executable code with its documentation and output in one interactive environment, and they represent a popular mechanism to document and share computational workflows, including for research publications.…

Computational Engineering, Finance, and Science · Computer Science 2022-09-12 Sheeba Samuel , Daniel Mietchen

Jupyter Notebooks are an enormously popular tool for creating and narrating computational research projects. They also have enormous potential for creating reproducible scientific research artifacts. Capturing the complete state of a…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-18 Dimuthu Wannipurage , Suresh Marru , Marlon Pierce

By bringing together code, text, and examples, Jupyter notebooks have become one of the most popular means to produce scientific results in a productive and reproducible way. As many of the notebook authors are experts in their scientific…

Software Engineering · Computer Science 2019-06-13 Jiawei Wang , Li Li , Andreas Zeller

Computational reproducibility is fundamental to trustworthy science, yet remains difficult to achieve in practice across various research workflows, including Jupyter notebooks published alongside scholarly articles. Environment drift,…

Software Engineering · Computer Science 2026-04-02 Sheeba Samuel , Daniel Mietchen , Hemanta Lo , Martin Gaedke

Interactive computing notebooks, such as Jupyter notebooks, have become a popular tool for developing and improving data-driven models. Such notebooks tend to be executed either in the user's own machine or in a cloud environment, having…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-02 Renato L. F. Cunha , Lucas V. Real , Renan Souza , Bruno Silva , Marco A. S. Netto

Computational notebooks, such as Jupyter, have been widely adopted by data scientists to write code for analyzing and visualizing data. Despite their growing adoption and popularity, there has been no thorough study to understand Jupyter…

Interactive notebooks are a precious tool for creating graphical user interfaces and teaching materials. Python and Jupyter are becoming increasingly popular in this context, with Jupyter widgets at the core of the interactive…

Physics Education · Physics 2024-09-02 Dou Du , Taylor J. Baird , Kristjan Eimre , Sara Bonella , Giovanni Pizzi

Computational notebooks are intended to prioritize the needs of scientists, but little is known about how scientists interact with notebooks, what requirements drive scientists' software development processes, or what tactics scientists use…

Software Engineering · Computer Science 2025-03-18 Ruanqianqian Huang , Savitha Ravi , Michael He , Boyu Tian , Sorin Lerner , Michael Coblenz

Reproducibility is a core requirement of modern scientific research. For computational research, reproducibility means that code should produce the same results, even when run on different systems. A standard approach to ensuring…

Other Computer Science · Computer Science 2023-10-03 Paxton C. Fitzpatrick , Jeremy R. Manning

"Computational experiments" use code and interactive visualizations to convey mathematical and physical concepts in an intuitive way, and are increasingly used to support ex cathedra lecturing in scientific and engineering disciplines.…

Scientific workflows facilitate computational, data manipulation, and sometimes visualization steps for scientific data analysis. They are vital for reproducing and validating experiments, usually involving computational steps in scientific…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-22 Jinli Duan , Shasha Dennis

Jupyter has become the go-to platform for developing data applications but data and security concerns, especially when dealing with healthcare, have become paramount for many institutions and applications dealing with sensitive information.…

Cryptography and Security · Computer Science 2020-06-03 Haw-minn Lu , Adrian Kwong , Jose Unpingco

Context: Jupyter Notebook has emerged as a versatile tool that transforms how researchers, developers, and data scientists conduct and communicate their work. As the adoption of Jupyter notebooks continues to rise, so does the interest from…

Software Engineering · Computer Science 2026-01-06 Md Saeed Siddik , Hao Li , Cor-Paul Bezemer

Computational notebooks have gained widespread adoption among researchers from academia and industry as they support reproducible science. These notebooks allow users to combine code, text, and visualizations for easy sharing of experiments…

Computers and Society · Computer Science 2020-06-23 Sheeba Samuel , Birgitta König-Ries
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