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Duplicating one's own code makes it faster to write software. This expediency is particularly valuable for users of computational notebooks. Duplication allows notebook users to quickly test hypotheses and iterate over data. In this paper,…

Software Engineering · Computer Science 2020-05-29 Andreas Koenzen , Neil Ernst , Margaret-Anne Storey

Computational notebooks, tools that facilitate storytelling through exploration, data analysis, and information visualization, have become the widely accepted standard in the data science community. These notebooks have been widely adopted…

Human-Computer Interaction · Computer Science 2023-08-08 Venkatesh Potluri , Sudheesh Singanamalla , Nussara Tieanklin , Jennifer Mankoff

Developers in data science and other domains frequently use computational notebooks to create exploratory analyses and prototype models. However, they often struggle to incorporate existing software engineering tooling into these…

Human-Computer Interaction · Computer Science 2021-03-30 Micah J. Smith , Jürgen Cito , Kalyan Veeramachaneni

In recent years, Jupyter notebooks have grown in popularity in several domains of software engineering, such as data science, machine learning, and computer science education. Their popularity has to do with their rich features for…

Software Engineering · Computer Science 2022-04-01 Konstantin Grotov , Sergey Titov , Vladimir Sotnikov , Yaroslav Golubev , Timofey Bryksin

Jupyter notebooks represent a unique format for programming - a combination of code and Markdown with rich formatting, separated into individual cells. We propose to perceive a Jupyter Notebook cell as a simplified and raw version of a…

Software Engineering · Computer Science 2022-01-03 Sergey Titov , Yaroslav Golubev , Timofey Bryksin

As access to the internet has become increasingly ubiquitous, along with the reliability and speed of internet providers, so too has the implementation of internet-based learning tools. These tools provide students opportunities to do…

Computers and Society · Computer Science 2024-09-20 Peter Berg , Zachary Kelly

Containers are an emerging technology that hold promise for improving productivity and code portability in scientific computing. We examine Linux container technology for the distribution of a non-trivial scientific computing software stack…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-19 Jack S. Hale , Lizao Li , Chris N. Richardson , Garth N. Wells

The massive trend of integrating data-driven AI capabilities into traditional software systems is rising new intriguing challenges. One of such challenges is achieving a smooth transition from the explorative phase of Machine Learning…

Software Engineering · Computer Science 2022-05-25 Luigi Quaranta

AI-powered code assistants, such as Copilot, are quickly becoming a ubiquitous component of contemporary coding contexts. Among these environments, computational notebooks, such as Jupyter, are of particular interest as they provide rich…

Human-Computer Interaction · Computer Science 2023-01-27 Andrew M. McNutt , Chenglong Wang , Robert A. DeLine , Steven M. Drucker

We report a user-friendly software environment for battery data science. It is designed to streamline data management, data cleaning, and data analysis to help bridge the gap between the domain expertise of most battery scientists and the…

Systems and Control · Electrical Eng. & Systems 2022-02-04 Robert Masse , Dan Ulery , Hardik Kamdar

Citing data and software is a means to give scholarly credit and to facilitate access to research objects. Citation principles encourage authors to provide full descriptions of objects, with stable links, in their papers. As Jupyter…

Digital Libraries · Computer Science 2020-04-28 Morgan F. Wofford , Bernadette M. Boscoe , Christine L. Borgman , Irene V. Pasquetto , Milena S. Golshan

Literate computing has emerged as an important tool for computational studies and open science, with growing folklore of best practices. In this work, we report two case studies - one in computational magnetism and another in computational…

Mathematical Software · Computer Science 2021-04-02 Marijan Beg , Juliette Taka , Thomas Kluyver , Alexander Konovalov , Min Ragan-Kelley , Nicolas M. Thiéry , Hans Fangohr

The trend toward open science increases the pressure on authors to provide access to the source code and data they used to compute the results reported in their scientific papers. Since sharing materials reproducibly is challenging, several…

Digital Libraries · Computer Science 2020-07-15 Markus Konkol , Daniel Nüst , Laura Goulier

As software systems increase in complexity, conventional monitoring methods struggle to provide a comprehensive overview or identify performance issues, often missing unexpected problems. Observability, however, offers a holistic approach,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-29 Bartosz Balis , Konrad Czerepak , Albert Kuzma , Jan Meizner , Lukasz Wronski

How can we better organize code in computational notebooks? Notebooks have become a popular tool among data scientists, as they seamlessly weave text and code together, supporting users to rapidly iterate and document code experiments.…

Human-Computer Interaction · Computer Science 2022-02-23 Zijie J. Wang , Katie Dai , W. Keith Edwards

Nowadays, numerous industries have exceptional demand for skills in data science, such as data analysis, data mining, and machine learning. The computational notebook (e.g., Jupyter Notebook) is a well-known data science tool adopted in…

Undergraduate programs in science and engineering include at least one course in basic programming, but seldom presented in a contextualized format, where computing is a tool for thinking and learning in the discipline. We have created a…

Computers and Society · Computer Science 2020-06-26 Lorena A. Barba

Jupyter Notebooks have become a mainstream tool for interactive computing in every field of science. Jupyter Notebooks are suitable as companion applications for Science Gateways, providing more flexibility and post-processing capability to…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-26 Andrea Zonca , Robert S. Sinkovits

Jupyter notebooks has emerged as a standard tool for data science programming. Programs in Jupyter notebooks are different from typical programs as they are constructed by a collection of code snippets interleaved with text and…

Software Engineering · Computer Science 2021-03-02 Malin Källén , Tobias Wrigstad

Science reproducibility is a cornerstone feature in scientific workflows. In most cases, this has been implemented as a way to exactly reproduce the computational steps taken to reach the final results. While these steps are often…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-21 Karan Vahi , Mats Rynge , George Papadimitriou , Duncan A. Brown , Rajiv Mayani , Rafael Ferreira da Silva , Ewa Deelman , Anirban Mandal , Eric Lyons , Michael Zink