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Multimodal scientific reasoning remains a significant challenge for large language models (LLMs), particularly in chemistry, where problem-solving relies on symbolic diagrams, molecular structures, and structured visual data. Here, we…

Computation and Language · Computer Science 2025-12-18 Yiming Cui , Xin Yao , Yuxuan Qin , Xin Li , Shijin Wang , Guoping Hu

Log analysis is crucial for monitoring system health and diagnosing failures in complex systems. Recent advances in large language models (LLMs) offer new opportunities for automated log analysis, leveraging their reasoning capabilities to…

Artificial Intelligence · Computer Science 2025-09-30 Lipeng Ma , Yixuan Li , Weidong Yang , Mingjie Zhou , Xinyi Liu , Ben Fei , Shuhao Li , Xiaoyan Sun , Sihang Jiang , Yanghua Xiao

Molecules are graphs, but large language models~(LLMs) are usually asked to reason about them through linear strings. The most popular molecular representation, SMILES, compresses atoms, bonds, branches and rings into a compact sequence in…

Biomolecules · Quantitative Biology 2026-05-19 Zhiyuan Yan , Chen Liu , Boxuan Zhao , Kaiqing Lin , Jixiang Zhao , Yimi Wang , Liuzhenghao Lv , Hao Li , Shanzhuo Zhang , Li Yuan , Fanyang Mo

Chemical large language models (LLMs) predominantly rely on explicit Chain-of-Thought (CoT) in natural language to perform complex reasoning. However, chemical reasoning is inherently continuous and structural, and forcing it into discrete…

Logical reasoning is fundamental for humans yet presents a substantial challenge in the domain of Artificial Intelligence. Initially, researchers used Knowledge Representation and Reasoning (KR) systems that did not scale and required…

Computation and Language · Computer Science 2024-04-02 Man Luo , Shrinidhi Kumbhar , Ming shen , Mihir Parmar , Neeraj Varshney , Pratyay Banerjee , Somak Aditya , Chitta Baral

Mass spectrometry (MS) is a powerful analytical technique for identifying small molecules, yet determining complete molecular structures directly from tandem mass spectra (MS/MS) remains a long-standing challenge due to complex…

Computation and Language · Computer Science 2026-01-13 Yufeng Wang , Lu Wei , Lin Liu , Hao Xu , Haibin Ling

Although large language models (LLMs) have significant potential to advance chemical discovery, current LLMs lack core chemical knowledge, produce unreliable reasoning trajectories, and exhibit suboptimal performance across diverse chemical…

Computational Engineering, Finance, and Science · Computer Science 2025-10-23 Weida Wang , Benteng Chen , Di Zhang , Wanhao Liu , Shuchen Pu , Ben Gao , Jin Zeng , Xiaoyong Wei , Tianshu Yu , Shuzhou Sun , Tianfan Fu , Wanli Ouyang , Lei Bai , Jiatong Li , Zifu Wang , Yuqiang Li , Shufei Zhang

Logic is the science of correct inferences and a logical system is a tool to prove assertions in a certain logic in a correct way. There are many logical systems, and many ways of formalizing them, e.g., using natural deduction or sequent…

Logic in Computer Science · Computer Science 2013-01-22 Mário S. Alvim

Recent advances in test-time scaling have enabled Large Language Models (LLMs) to display sophisticated reasoning abilities via extended Chain-of-Thought (CoT) generation. Despite their potential, these Reasoning LLMs (RLMs) often…

Computation and Language · Computer Science 2025-05-21 Zhen Xiong , Yujun Cai , Zhecheng Li , Yiwei Wang

Molecular optimization is a central task in drug discovery that requires precise structural reasoning and domain knowledge. While large language models (LLMs) have shown promise in generating high-level editing intentions in natural…

Machine Learning · Computer Science 2025-10-17 Wenyu Zhu , Chengzhu Li , Xiaohe Tian , Yifan Wang , Yinjun Jia , Jianhui Wang , Bowen Gao , Ya-Qin Zhang , Wei-Ying Ma , Yanyan Lan

Human reasoning can be understood as a cooperation between the intuitive, associative "System-1" and the deliberative, logical "System-2". For existing System-1-like methods in visual activity understanding, it is crucial to integrate…

Computer Vision and Pattern Recognition · Computer Science 2023-11-30 Xiaoqian Wu , Yong-Lu Li , Jianhua Sun , Cewu Lu

With the continuous advancement of reasoning abilities in Large Language Models (LLMs), their application to scientific reasoning tasks has gained significant research attention. Current research primarily emphasizes boosting LLMs'…

Artificial Intelligence · Computer Science 2026-05-19 Zhaoxin Yu , Nan Xu , Kun Chen , Jiahao Zhao , Lei Wang , Wenji Mao

Logical reasoning is a pivotal component in the field of artificial intelligence. Proof planning, particularly in contexts requiring the validation of explanation accuracy, continues to present challenges. The recent advancement of large…

Computation and Language · Computer Science 2025-10-31 Ying Su , Mingwen Liu , Zhijiang Guo

Neuro-symbolic AI systems integrate neural perception with symbolic reasoning to enable data-efficient, interpretable, and robust intelligence beyond purely neural models. Although this compositional paradigm has shown superior performance…

Artificial Intelligence · Computer Science 2026-01-29 Zishen Wan , Che-Kai Liu , Jiayi Qian , Hanchen Yang , Arijit Raychowdhury , Tushar Krishna

Thinking Large Language Models (LLMs) generate explicit intermediate reasoning traces before final answers, potentially improving transparency, interpretability, and solution accuracy for code generation. However, the quality of these…

Artificial Intelligence · Computer Science 2025-11-11 Haoran Xue , Gias Uddin , Song Wang

With the widespread application of multimodal large language models in scientific intelligence, there is an urgent need for more challenging evaluation benchmarks to assess their ability to understand complex scientific data. Scientific…

Artificial Intelligence · Computer Science 2025-12-12 Yitong Zhou , Mingyue Cheng , Qingyang Mao , Yucong Luo , Qi Liu , Yupeng Li , Xiaohan Zhang , Deguang Liu , Xin Li , Enhong Chen

In this paper, we address the challenging task of multimodal reasoning by incorporating the notion of ``slow thinking'' into multimodal large language models (MLLMs). Our core idea is that models can learn to adaptively use different levels…

Computer Vision and Pattern Recognition · Computer Science 2026-01-12 Kun Xiang , Zhili Liu , Terry Jingchen Zhang , Yinya Huang , Yunshuang Nie , Kaixin Cai , Yiyang Yin , Runhui Huang , Hanhui Li , Yihan Zeng , Yu-Jie Yuan , Jianhua Han , Lanqing Hong , Hang Xu , Xiaodan Liang

Vision-language models (VLMs) have recently demonstrated strong efficacy as visual assistants that can parse natural queries about the visual content and generate human-like outputs. In this work, we explore the ability of these models to…

Computation and Language · Computer Science 2024-03-21 Yangyi Chen , Karan Sikka , Michael Cogswell , Heng Ji , Ajay Divakaran

Two lines of approaches are adopted for complex reasoning with LLMs. One line of work prompts LLMs with various reasoning structures, while the structural outputs can be naturally regarded as intermediate reasoning steps. Another line of…

Artificial Intelligence · Computer Science 2025-02-25 Sen Yang , Xin Li , Leyang Cui , Lidong Bing , Wai Lam

In the context of large language models (LLMs), current advanced reasoning methods have made impressive strides in various reasoning tasks. However, when it comes to logical reasoning tasks, major challenges remain in both efficacy and…

Computation and Language · Computer Science 2025-10-01 Jundong Xu , Hao Fei , Meng Luo , Qian Liu , Liangming Pan , William Yang Wang , Preslav Nakov , Mong-Li Lee , Wynne Hsu