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Organisms are equipped with regulatory systems that display a variety of dynamical behaviours ranging from simple stable steady states, to switching and multistability, to oscillations. Earlier work has shown that oscillations in protein…

Molecular Networks · Quantitative Biology 2009-11-13 Simone Pigolotti , Sandeep Krishna , Mogens H. Jensen

Living organisms must respond to environmental changes. Generally, accurate and rapid responses are provided by simple, unidirectional networks that connect inputs with outputs. Besides accuracy and speed, biological responses should also…

Molecular Networks · Quantitative Biology 2021-09-01 Masayo Inoue , Kunihiko Kaneko

Differential equations are a ubiquitous tool to study dynamics, ranging from physical systems to complex systems, where a large number of agents interact through a graph with non-trivial topological features. Data-driven approximations of…

Statistical Mechanics · Physics 2024-04-26 Vaiva Vasiliauskaite , Nino Antulov-Fantulin

Explaining the wide range of dynamics observed in ecological communities is challenging due to the large number of species involved, the complex network of interactions among them, and the influence of multiple environmental variables.…

Populations and Evolution · Quantitative Biology 2025-03-28 Francesco Ferraro , Christian Grilletta , Emanuele Pigani , Samir Suweis , Sandro Azaele , Amos Maritan

Delayed processes are ubiquitous in biological systems and are often characterized by delay differential equations (DDEs) and their extension to include stochastic effects. DDEs do not explicitly incorporate intermediate states associated…

Quantitative Methods · Quantitative Biology 2016-09-28 Jingchen Feng , Stuart Sevier , Bin Huang , Dongya Jia , Herbert Levine

The mutual influence of dynamics and structure is a central issue in complex systems. In this paper we study by simulation slow evolution of network under the feedback of a local-majority-rule opinion process. If performance-enhancing local…

Physics and Society · Physics 2009-11-13 Zhen Shao , Haijun Zhou

I study a recently proposed statistical model of earthquake dynamics that incorporates aging as a fundamental ingredient. The model is known to generate earthquake sequences that quantitatively reproduce the spatial and temporal clustering…

Statistical Mechanics · Physics 2015-05-19 E. A. Jagla

In this paper the dynamics of Pierce diode with overcritical current under the influence of delay feedback is investigated. The system without feedback demonstrates complex behaviour including chaotic regimes. The possibility of oscillation…

Plasma Physics · Physics 2007-05-23 Alexander E. Hramov , Irene S. Rempen

It is known that an identical delay in all transmission lines can destabilize macroscopic stationarity of a neural network, causing oscillation or chaos. We analyze the collective dynamics of a network whose intra-transmission delays are…

Disordered Systems and Neural Networks · Physics 2011-11-10 Takahiro Omi , Shigeru Shinomoto

A major achievement in the study of complex networks is the observation that diverse systems, from sub-cellular biology to social networks, exhibit universal topological characteristics. Yet this universality does not naturally translate to…

Physics and Society · Physics 2018-01-29 Chittaranjan Hens , Uzi Harush , Reuven Cohen , Baruch Barzel

What can we learn about controlling a system solely from its underlying network structure? Here we adapt a recently developed framework for control of networks governed by a broad class of nonlinear dynamics that includes the major dynamic…

Disordered Systems and Neural Networks · Physics 2017-07-07 Jorge G. T. Zañudo , Gang Yang , Réka Albert

Signal transmission delays tend to destabilize dynamical networks leading to oscillation, but their dispersion contributes oppositely toward stabilization. We analyze an integro-differential equation that describes the collective dynamics…

Disordered Systems and Neural Networks · Physics 2008-04-18 Takahiro Omi , Shigeru Shinomoto

Owing to the influence of real-world networks both in science and society, numerous mathematical models have been developed to understand the structure and evolution of these systems, particularly in a temporal context. Recent advancements…

Probability · Mathematics 2025-10-29 Sayan Banerjee , Shankar Bhamidi , Partha Dey , Akshay Sakanaveeti

This paper is concerned with conditions for the existence of oscillations in gene regulatory networks with negative cyclic feedback, where time delays in transcription, translation and translocation process are explicitly considered. The…

Systems and Control · Computer Science 2013-01-01 Masaaki Takada , Yutaka Hori , Shinji Hara

Over the last years, a great deal of attention has been focused on complex networked systems, characterized by intricate structure and dynamics. The latter has been often represented in terms of overall statistics (e.g. average and standard…

Data Analysis, Statistics and Probability · Physics 2011-09-15 Cesar H. Comin , João B. Bunoro , Matheus P. Viana , Luciano da F. Costa

Feedback delay has been identified as a key ingredient in the quorum sensing synchronization of synthetic gene oscillators. While this influence has been evidenced at the theoretical level in a simplified system of degrade-and-fire…

Dynamical Systems · Mathematics 2024-05-14 Bastien Fernandez , Matteo Tanzi

Dynamical networks are powerful tools for modeling a broad range of complex systems, including financial markets, brains, and ecosystems. They encode how the basic elements (nodes) of these systems interact altogether (via links) and evolve…

Physics and Society · Physics 2019-03-13 Edward Laurence , Nicolas Doyon , Louis J Dubé , Patrick Desrosiers

The dynamics of networks of interacting systems depends intricately on the interaction topology. When the dynamics is explored, generally the whole topology has to be considered. However, we show that there are certain mesoscale subgraphs…

Chaotic Dynamics · Physics 2012-07-06 Anne-Ly Do , Johannes Höfener , Thilo Gross

We present and analyze a topologically induced transition from ordered, synchronized to disordered dynamics in directed networks of oscillators. The analysis reveals where in the space of networks this transition occurs and its underlying…

Disordered Systems and Neural Networks · Physics 2007-05-23 Marc Timme

Critical points separate distinct dynamical regimes of complex systems, often delimiting functional or macroscopic phases in which the system operates. However, the long-term prediction of critical regimes and behaviors is challenging given…

Physics and Society · Physics 2025-04-15 Xiangrong Wang , Dan Lu , Zongze Wu , Weina Xu , Hongru Hou , Yanqing Hu , Yamir Moreno