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In a complex system, the interactions between individual agents often lead to emergent collective behavior like spontaneous synchronization, swarming, and pattern formation. The topology of the network of interactions can have a dramatic…

Adaptation and Self-Organizing Systems · Physics 2022-07-25 Mark J Panaggio , Maria-Veronica Ciocanel , Lauren Lazarus , Chad M Topaz , Bin Xu

Complex systems, such as biological networks, often exhibit intricate rhythmic behaviors that emerge from simple, small-amplitude dynamics in individual components. This study explores how significant oscillatory signals can arise from a…

Adaptation and Self-Organizing Systems · Physics 2025-08-05 Kenta Ohira , Toru Ohira , Hideki Ohira

Understanding the relationship between complexity and stability in large dynamical systems -- such as ecosystems -- remains a key open question in complexity theory which has inspired a rich body of work developed over more than fifty…

Populations and Evolution · Quantitative Biology 2021-07-14 Yvonne Krumbeck , Qian Yang , George W. A. Constable , Tim Rogers

We study two coupled systems, one playing the role of the driver system and the other one of the driven system. The driver system is a time-delayed oscillator, and the driven or response system has a negligible delay. Since the driver…

Dynamical Systems · Mathematics 2024-05-09 Mattia Coccolo , Miguel A. F. Sanjuán

Complex, oscillatory data arises from a large variety of biological, physical, and social systems. However, the inherent oscillation and ubiquitous noise pose great challenges to current methodology such as linear and nonlinear time series…

Chaotic Dynamics · Physics 2008-09-19 J. Zhang , K. Zhang , J. Feng , J. Sun , X. Xu , M. Small

Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

In-phase synchronization is a special case of synchronous behavior when coupled oscillators have the same phases for any time moments. Such behavior appears naturally for nearly identical coupled limit-cycle oscillators when the coupling…

Adaptation and Self-Organizing Systems · Physics 2019-09-24 Viktor Novičenko , Irmantas Ratas

First-principles-based modelings have been extremely successful in providing crucial insights and predictions for complex biological functions and phenomena. However, they can be hard to build and expensive to simulate for complex living…

Adaptation and Self-Organizing Systems · Physics 2024-11-26 Ruilin Zhang , Zhongyi Wang , Tianyi Wu , Yuhang Cai , Louis Tao , Zhuo-Cheng Xiao , Yao Li

Gene Regulatory Networks(GRNs) with feedback are essential components of many cellular processes and may exhibit oscillatory behavior. Analyzing such systems becomes increasingly complex as the number of components increases. Since gene…

Molecular Networks · Quantitative Biology 2026-04-22 Manuel Eduardo Hernández-García , Jorge Velázquez-Castro

Delay is an important and ubiquitous aspect of many biochemical processes. For example, delay plays a central role in the dynamics of genetic regulatory networks as it stems from the sequential assembly of first mRNA and then protein.…

Molecular Networks · Quantitative Biology 2015-06-18 Chinmaya Gupta , José Manuel López , Robert Azencott , Matthew R Bennett , Krešimir Josić , William Ott

Complex systems are often modeled as Boolean networks in attempts to capture their logical structure and reveal its dynamical consequences. Approximating the dynamics of continuous variables by discrete values and Boolean logic gates may,…

Molecular Networks · Quantitative Biology 2013-05-29 Johannes Norrell , Joshua E. S. Socolar

Synchronization of non-identical oscillators coupled through complex networks is an important example of collective behavior. It is interesting to ask how the structural organization of network interactions influences this process. Several…

Adaptation and Self-Organizing Systems · Physics 2017-09-13 Lia Papadopoulos , Jason Kim , Jurgen Kurths , Danielle S. Bassett

Link prediction is an open problem in the complex network, which attracts much research interest currently. However, little attention has been paid to the relation between network structure and the performance of prediction methods. In…

Social and Information Networks · Computer Science 2014-10-28 Xu Feng , Jichang Zhao , Ke Xu

Complex systems such as ecological communities and neuron networks are essential parts of our everyday lives. These systems are composed of units which interact through intricate networks. The ability to predict sudden changes in the…

Adaptation and Self-Organizing Systems · Physics 2021-07-07 Deniz Eroglu , Matteo Tanzi , Sebastian van Strien , Tiago Pereira

Inspired by the observation of a distributed time delay in the nonlinear response of an optical resonator, we investigate the effects of a similar delay on a noise-driven mechanical oscillator. For a delay time that is commensurate with the…

Optics · Physics 2022-02-16 K. J. H. Peters , S. R. K. Rodriguez

Time lags occur in a vast range of real-world dynamical systems due to finite reaction times or propagation speeds. Here we derive an analytical approach to determine the asymptotic stability of synchronous states in networks of coupled…

Dynamical Systems · Mathematics 2020-07-08 Reyk Börner , Paul Schultz , Benjamin Ünzelmann , Deli Wang , Frank Hellmann , Jürgen Kurths

We consider a one-dimensional directional array of diffusively coupled oscillators. They are perturbed by the injection of a small additive noise, typically orders of magnitude smaller than the oscillation amplitude, and the system is…

Disordered Systems and Neural Networks · Physics 2019-01-09 Clement Zankoc , Duccio Fanelli , Francesco Ginelli , Roberto Livi

Lateral inhibition resulting from a double-negative feedback loop underlies the assignment of different fates to cells in many developmental processes. Previous studies have shown that the presence of time delays in models of lateral…

Cell Behavior · Quantitative Biology 2015-05-13 Hiroshi Momiji , Nicholas A. M. Monk

Biological systems (among others) may respond to a large variety of distinct external stimuli, or signals. These perturbations will generally be presented to the system not singly, but in various combinations, so that a proper understanding…

Quantitative Methods · Quantitative Biology 2011-06-24 Dennis Wylie

The stable functionality of networked systems is a hallmark of their natural ability to coordinate between their multiple interacting components. Yet, strikingly, real-world networks seem random and highly irregular, apparently lacking any…

Adaptation and Self-Organizing Systems · Physics 2023-04-25 Chandrakala Meena , Chittaranjan Hens , Suman Acharyya , Simcha Haber , Stefano Boccaletti , Baruch Barzel
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