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Soft-tissue deformation remains a major limitation in image-guided neurosurgery, where intra-operative anatomy can deviate substantially from pre-operative imaging due to brain shift, compromising navigation accuracy and surgical safety.…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Eashrat Jahan Muniya , Gernot Kronreif , Ander Biguri , Wolfgang Birkfellner , Sepideh Hatamikia

We propose FlowReg, a deep learning-based framework for unsupervised image registration for neuroimaging applications. The system is composed of two architectures that are trained sequentially: FlowReg-A which affinely corrects for gross…

Computer Vision and Pattern Recognition · Computer Science 2021-09-02 Sergiu Mocanu , Alan R. Moody , April Khademi

The world faces a shortage of radiologists, leading to longer treatment times and increased stress, negatively impacting patient safety and workforce morale. Integrating artificial intelligence to interpret radiographic images and generate…

Image and Video Processing · Electrical Eng. & Systems 2024-06-19 Marijn Borghouts

The advent of large-scale self-supervised learning (SSL) has produced a vast zoo of medical foundation models. However, selecting optimal medical foundation models for specific segmentation tasks remains a computational bottleneck. Existing…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Jiaqi Tang , Shaoyang Zhang , Xiaoqi Wang , Jiaying Zhou , Yang Liu , Qingchao Chen

Computed Tomography (CT) is one of the most widely used and diagnostically information-dense imaging modalities, covering critical organs such as the heart, lungs, liver, and colon. Clinical interpretation relies on both slice-driven local…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Tianwei Lin , Zhongwei Qiu , Wenqiao Zhang , Jiang Liu , Yihan Xie , Mingjian Gao , Zhenxuan Fan , Zhaocheng Li , Sijing Li , Zhongle Xie , Peng LU , Yueting Zhuang , Ling Zhang , Beng Chin Ooi , Yingda Xia

With the rapid evolution of 3D generation algorithms, the cost of producing 3D humanoid character models has plummeted, yet the field is impeded by the lack of a comprehensive dataset for automatic rigging, which is a pivotal step in…

Computer Vision and Pattern Recognition · Computer Science 2024-12-04 Zedong Chu , Feng Xiong , Meiduo Liu , Jinzhi Zhang , Mingqi Shao , Zhaoxu Sun , Di Wang , Mu Xu

Organogenesis has been studied for decades, but fundamental questions regarding the control of growth and shape remain unsolved. We have recently shown that of all proposed mathematical models only ligand-receptor based Turing models…

Quantitative Methods · Quantitative Biology 2016-10-31 Lucas Daniel Wittwer , Roberto Croce , Sebastian Aland , Dagmar Iber

Precise image segmentation provides clinical study with instructive information. Despite the remarkable progress achieved in medical image segmentation, there is still an absence of a 3D foundation segmentation model that can segment a wide…

Computer Vision and Pattern Recognition · Computer Science 2025-02-13 Yuxin Du , Fan Bai , Tiejun Huang , Bo Zhao

The integration of multimodal medical imaging can provide complementary and comprehensive information for the diagnosis of Alzheimer's disease (AD). However, in clinical practice, since positron emission tomography (PET) is often missing,…

Computational Engineering, Finance, and Science · Computer Science 2024-12-03 Fuyou Mao , Lixin Lin , Ming Jiang , Dong Dai , Chao Yang , Hao Zhang , Yan Tang

Combining physics-based modeling with data-driven methods is critical to enabling the translation of computational methods to clinical use in cardiology. The use of rigorous differential equations combined with machine learning tools allows…

Image and Video Processing · Electrical Eng. & Systems 2025-04-30 Elena Martinez , Beatrice Moscoloni , Matteo Salvador , Fanwei Kong , Mathias Peirlinck , Alison Lesley Marsden

The ability to predict patient-specific soft tissue deformations is key for computer-integrated surgery systems and the core enabling technology for a new era of personalized medicine. Element-Free Galerkin (EFG) methods are better suited…

Computational Engineering, Finance, and Science · Computer Science 2019-06-14 Grand Joldes , George Bourantas , Benjamin Zwick , Habib Chowdhury , Adam Wittek , Sudip Agrawal , Konstantinos Mountris , Damon Hyde , Simon K. Warfield , Karol Miller

Neuropathological analyses benefit from spatially precise volumetric reconstructions that enhance anatomical delineation and improve morphometric accuracy. Our prior work has shown the feasibility of reconstructing 3D brain volumes from 2D…

The lack of sufficient annotated image data is a common issue in medical image segmentation. For some organs and densities, the annotation may be scarce, leading to poor model training convergence, while other organs have plenty of…

Image and Video Processing · Electrical Eng. & Systems 2021-09-22 Anastasia Makarevich , Azade Farshad , Vasileios Belagiannis , Nassir Navab

While content-based image retrieval (CBIR) has been extensively studied in natural image retrieval, its application to medical images presents ongoing challenges, primarily due to the 3D nature of medical images. Recent studies have shown…

Computer Vision and Pattern Recognition · Computer Science 2024-07-08 Farnaz Khun Jush , Steffen Vogler , Tuan Truong , Matthias Lenga

The fine-grained surface reconstruction of different organs from 3D medical imaging can provide advanced diagnostic support and improved surgical planning. However, the representation of the organs is often limited by the resolution, with a…

Computer Vision and Pattern Recognition · Computer Science 2025-09-16 Farahdiba Zarin , Nicolas Padoy , Jérémy Dana , Vinkle Srivastav

The log Euclidean polyrigid registration framework provides a way to smoothly estimate and interpolate poly-rigid/affine transformations for which the invertibility is guaranteed. This powerful and flexible mathematical framework is…

Computer Vision and Pattern Recognition · Computer Science 2020-06-11 K. Makki , B. Borotikar , M. Garetier , S. Brochard , D. Ben Salem , F. Rousseau

Knowledge graphs (KGs) and multimodal item information, which respectively capture relational and attribute features, play a crucial role in improving recommender system accuracy. Recent studies have attempted to integrate them via…

Information Retrieval · Computer Science 2025-07-15 Jie Guo , Jiahao Jiang , Ziyuan Guo , Bin Song , Yue Sun

Spatial reasoning and visual grounding are core capabilities for vision-language models (VLMs), yet most medical VLMs produce predictions without transparent reasoning or spatial evidence. Existing benchmarks also evaluate VLMs on isolated…

Computer Vision and Pattern Recognition · Computer Science 2026-04-20 Lama Moukheiber , Caleb M. Yeung , Haotian Xue , Alec Helbling , Zelin Zhao , Yongxin Chen

We propose a new multi-instance dynamic RGB-D SLAM system using an object-level octree-based volumetric representation. It can provide robust camera tracking in dynamic environments and at the same time, continuously estimate geometric,…

Robotics · Computer Science 2019-03-25 Binbin Xu , Wenbin Li , Dimos Tzoumanikas , Michael Bloesch , Andrew Davison , Stefan Leutenegger

Unregistered surface meshes, especially raw 3D scans, present significant challenges for automatic computation of plausible deformations due to the lack of established point-wise correspondences and the presence of noise in the data. In…

Graphics · Computer Science 2025-09-01 Thomas Besnier , Sylvain Arguillère , Mohamed Daoudi