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Diffusion-based models have shown great promise in molecular generation but often require a large number of sampling steps to generate valid samples. In this paper, we introduce a novel Straight-Line Diffusion Model (SLDM) to tackle this…

Machine Learning · Computer Science 2025-06-10 Yuyan Ni , Shikun Feng , Haohan Chi , Bowen Zheng , Huan-ang Gao , Wei-Ying Ma , Zhi-Ming Ma , Yanyan Lan

Diffusion language models (dLMs) have emerged as a promising paradigm that enables parallel, non-autoregressive generation, but their learning efficiency lags behind that of autoregressive (AR) language models when trained from scratch. To…

Latent diffusion models offer an attractive alternative to discrete diffusion for non-autoregressive text generation by operating on continuous text representations and denoising entire sequences in parallel. The major challenge in latent…

Computation and Language · Computer Science 2026-05-11 Viacheslav Meshchaninov , Alexander Shabalin , Egor Chimbulatov , Nikita Gushchin , Ilya Koziev , Alexander Korotin , Dmitry Vetrov

Proteins are shaped by gradual evolution under biophysical and functional constraints. Protein language models learn rich evolutionary constraints from large-scale sequences, and discrete diffusion-based protein language models~(\eg, DPLMs)…

Machine Learning · Computer Science 2026-05-14 Xinyou Wang , Liang Hong , Jiasheng Ye , Zaixiang Zheng , Yu Li , Shujian Huang , Quanquan Gu

Masked diffusion language models (MDLMs) generate text via iterative masked-token denoising, enabling mask-parallel decoding and distinct controllability and efficiency tradeoffs from autoregressive LLMs. Yet, efficient representation-level…

Computation and Language · Computer Science 2026-03-31 Adi Shnaidman , Erin Feiglin , Osher Yaari , Efrat Mentel , Amit Levi , Raz Lapid

Recent advances in generative medical models are constrained by modality-specific scenarios that hinder the integration of complementary evidence from imaging, pathology, and clinical notes. This fragmentation limits their evolution into…

Computer Vision and Pattern Recognition · Computer Science 2025-10-08 Jiawei Mao , Yuhan Wang , Lifeng Chen , Can Zhao , Yucheng Tang , Dong Yang , Liangqiong Qu , Daguang Xu , Yuyin Zhou

Diffusion Language Models (DLMs) offer attractive advantages over Auto-Regressive (AR) models, such as full-attention parallel decoding and flexible generation. However, standard DLM training uses a static, single-step masked prediction…

Computation and Language · Computer Science 2026-04-14 Zehua Pei , Hui-Ling Zhen , Weizhe Lin , Sinno Jialin Pan , Yunhe Wang , Mingxuan Yuan , Bei Yu

This paper shows how diffusion language models (DLMs) can be used as effective and efficient retrievers. Existing DLM-based retrievers (e.g., DiffEmbed) follow BERT-style encoding, representing each query or passage as a single mean-pooled…

Information Retrieval · Computer Science 2026-05-29 Shuai Wang , Yu Yin , Shengyao Zhuang , Bevan Koopman , Guido Zuccon

Diffusion models have emerged as a powerful class of generative models for molecular design, capable of capturing complex structural distributions and achieving high fidelity in 3D molecule generation. However, their widespread use remains…

Machine Learning · Computer Science 2026-01-15 Adrita Das , Peiran Jiang , Dantong Zhu , Barnabas Poczos , Jose Lugo-Martinez

Diffusion Language Models (DLMs) have emerged as a promising new paradigm for text generative modeling, potentially addressing limitations of autoregressive (AR) models. However, current DLMs have been studied at a smaller scale compared to…

Computation and Language · Computer Science 2025-06-03 Shansan Gong , Shivam Agarwal , Yizhe Zhang , Jiacheng Ye , Lin Zheng , Mukai Li , Chenxin An , Peilin Zhao , Wei Bi , Jiawei Han , Hao Peng , Lingpeng Kong

Diffusion Language Models (DLMs) offer a promising alternative for language modeling by enabling parallel decoding through iterative refinement. However, most DLMs rely on hard binary masking and discrete token assignments, which hinder the…

Computation and Language · Computer Science 2026-01-19 Linhao Zhong , Linyu Wu , Bozhen Fang , Tianjian Feng , Chenchen Jing , Wen Wang , Jiaheng Zhang , Hao Chen , Chunhua Shen

Decision Transformer (DT), a trajectory modelling method, has shown competitive performance compared to traditional offline reinforcement learning (RL) approaches on various classic control tasks. However, it struggles to learn optimal…

Machine Learning · Computer Science 2025-09-18 Xingshuai Huang , Di Wu , Benoit Boulet

Recent advances in large language models (LLMs) have inspired new paradigms for document reranking. While this paradigm better exploits the reasoning and contextual understanding capabilities of LLMs, most existing LLM-based rerankers rely…

Information Retrieval · Computer Science 2026-02-16 Qi Liu , Kun Ai , Jiaxin Mao , Yanzhao Zhang , Mingxin Li , Dingkun Long , Pengjun Xie , Fengbin Zhu , Ji-Rong Wen

Masked Diffusion Language Models (DLMs) have recently emerged as a promising alternative to traditional Autoregressive Models (ARMs). DLMs employ transformer encoders with bidirectional attention, enabling parallel token generation while…

Computation and Language · Computer Science 2025-12-11 Maximo Eduardo Rulli , Simone Petruzzi , Edoardo Michielon , Fabrizio Silvestri , Simone Scardapane , Alessio Devoto

Language models have advanced sequence analysis, yet DNA foundation models often lag behind task-specific methods for unclear reasons. We present AntigenLM, a generative DNA language model pretrained on influenza genomes with intact,…

Genomics · Quantitative Biology 2026-02-12 Yue Pei , Xuebin Chi , Yu Kang

This paper presents DNAct, a language-conditioned multi-task policy framework that integrates neural rendering pre-training and diffusion training to enforce multi-modality learning in action sequence spaces. To learn a generalizable…

Robotics · Computer Science 2024-03-11 Ge Yan , Yueh-Hua Wu , Xiaolong Wang

Masked Diffusion Language Models (MDLMs) have recently emerged as a promising alternative to Autoregressive Language Models (ARLMs), leveraging a denoising objective that, in principle, should enable more uniform context utilisation. In…

Machine Learning · Computer Science 2025-11-27 Julianna Piskorz , Cristina Pinneri , Alvaro Correia , Motasem Alfarra , Risheek Garrepalli , Christos Louizos

Diffusion Language Models (DLMs) are often advertised as enabling parallel token generation, yet practical fast DLMs frequently converge to left-to-right, autoregressive (AR)-like decoding dynamics. In contrast, genuinely non-AR generation…

Computation and Language · Computer Science 2026-03-02 Pengxiang Li , Dilxat Muhtar , Tianlong Chen , Lu Yin , Shiwei Liu

Discrete diffusion language models (dLLMs) provide a fast and flexible alternative to autoregressive models (ARMs) via iterative denoising with parallel updates. However, their evaluation is challenging: existing metrics conflate denoiser…

Machine Learning · Computer Science 2026-05-29 Luhan Tang , Longxuan Yu , Shaorong Zhang , Greg Ver Steeg

Controllable generation is a fundamental task in NLP with many applications, providing a basis for function calling to agentic communication. However, even state-of-the-art autoregressive Large Language Models (LLMs) today exhibit…

Computation and Language · Computer Science 2025-09-29 Zhen Xiong , Yujun Cai , Zhecheng Li , Yiwei Wang