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Genomic data are rapidly resolving the tree of living species calibrated to time, the timetree of life, which will provide a framework for research in diverse fields of science. Previous analyses of taxonomically restricted timetrees have…

Populations and Evolution · Quantitative Biology 2014-12-16 S. Blair Hedges , Julie Marin , Michael Suleski , Madeline Paymer , Sudhir Kumar

Evolution is a process that is influenced by various environmental factors, e.g. the interactions between different species, genes, and biogeographical properties. Hence, it is interesting to study the combined evolutionary history of…

Quantitative Methods · Quantitative Biology 2013-08-02 Nicolas Wieseke , Matthias Bernt , Martin Middendorf

Operationalizing AI has become a major endeavor in both research and industry. Automated, operationalized pipelines that manage the AI application lifecycle will form a significant part of tomorrow's infrastructure workloads. To optimize…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-24 Thomas Rausch , Waldemar Hummer , Vinod Muthusamy

Reproducibility is an important requirement in evolutionary computation, where results largely depend on computational experiments. In practice, reproducibility relies on how algorithms, experimental protocols, and artifacts are documented…

Neural and Evolutionary Computing · Computer Science 2026-02-10 Francesca Da Ros , Tarik Začiragić , Aske Plaat , Thomas Bäck , Niki van Stein

Learning diverse and high-fidelity traffic simulations from human driving demonstrations is crucial for autonomous driving evaluation. The recent next-token prediction (NTP) paradigm, widely adopted in large language models (LLMs), has been…

Robotics · Computer Science 2026-03-30 Ziyan Wang , Peng Chen , Ding Li , Chiwei Li , Qichao Zhang , Zhongpu Xia , Guizhen Yu

The paradigm of automated program generation is shifting from one-shot generation to inference-time search, where Large Language Models (LLMs) function as semantic mutation operators within evolutionary loops. While effective, these systems…

Neural and Evolutionary Computing · Computer Science 2026-02-24 Mert Cemri , Shubham Agrawal , Akshat Gupta , Shu Liu , Audrey Cheng , Qiuyang Mang , Ashwin Naren , Lutfi Eren Erdogan , Koushik Sen , Matei Zaharia , Alex Dimakis , Ion Stoica

The paper proposes a text-mining based analytical framework aiming at the cognitive organization of complex scientific discourses. The approach is based on models recently developed in science mapping, being a generalization of the…

Digital Libraries · Computer Science 2015-04-23 Sandor Soos

The recent development on large language models makes automatically constructing small programs possible. It thus has the potential to free software engineers from low-level coding and allow us to focus on the perhaps more interesting parts…

Software Engineering · Computer Science 2024-01-03 Simiao Zhang , Jiaping Wang , Guoliang Dong , Jun Sun , Yueling Zhang , Geguang Pu

Complex systems fail. I argue that failures can be a blueprint characterizing living organisms and biological intelligence, a control mechanism to increase complexity in evolutionary simulations, and an alternative to classical fitness…

Artificial Intelligence · Computer Science 2021-02-25 Lana Sinapayen

Complex systems, in many different scientific sectors, show coarse-grain properties with simple growth laws with respect to fundamental microscopic algorithms. We propose a classification scheme of growth laws which includes human aging,…

Biological Physics · Physics 2012-07-17 P. Castorina , P. Blanchard

In computer experiments, a mathematical model implemented on a computer is used to represent complex physical phenomena. These models, known as computer simulators, enable experimental study of a virtual representation of the complex…

Methodology · Statistics 2012-07-03 Hugh Chipman , Pritam Ranjan , Weiwei Wang

Learning classifier systems (LCSs) are evolutionary machine learning algorithms, flexible enough to be applied to reinforcement, supervised and unsupervised learning problems with good performance. Recently, self organizing classifiers were…

Neural and Evolutionary Computing · Computer Science 2018-11-21 Danilo Vasconcellos Vargas , Hirotaka Takano , Junichi Murata

Many kinds of Evolutionary Algorithms (EAs) have been described in the literature since the last 30 years. However, though most of them share a common structure, no existing software package allows the user to actually shift from one model…

Neural and Evolutionary Computing · Computer Science 2011-11-10 Pierre Collet , Marc Schoenauer

Evolve-based agent such as AlphaEvolve is one of the notable successes in using Large Language Models (LLMs) to build AI Scientists. These agents tackle open-ended scientific problems by iteratively improving and evolving programs,…

Machine Learning · Computer Science 2026-03-31 Yongqiang Chen , Chenxi Liu , Zhenhao Chen , Tongliang Liu , Bo Han , Kun Zhang

Multiple Artificial Intelligence (AI) methods have been proposed over recent years to create controllers to play multiple video games of different nature and complexity without revealing the specific mechanics of each of these games to the…

Neural and Evolutionary Computing · Computer Science 2020-09-01 Edgar Galván , Oxana Gorshkova , Peter Mooney , Fred Valdez Ameneyro , Erik Cuevas

Theory of Mind (ToM) is the ability to understand and reflect on the mental states of others. Although this capability is crucial for human interaction, testing on Large Language Models (LLMs) reveals that they possess only a rudimentary…

Computation and Language · Computer Science 2025-01-17 Sneheel Sarangi , Maha Elgarf , Hanan Salam

While Large Language Models (LLMs) have empowered AI research agents to perform isolated scientific tasks, automating complex, real-world workflows, such as LLM training, remains a significant challenge. In this paper, we introduce TREX, a…

Artificial Intelligence · Computer Science 2026-04-23 Zerun Ma , Guoqiang Wang , Xinchen Xie , Yicheng Chen , He Du , Bowen Li , Yanan Sun , Wenran Liu , Kai Chen , Yining Li

We discuss recent observational data on the transverse and radial velocities, as well as on the masses of the main components of the Orion Trapezium. Based on the most reliable values of these quantities we study the dynamical evolution of…

Solar and Stellar Astrophysics · Physics 2017-01-18 C. Allen , R. Costero , A. Ruelas-Mayorga , L. J. Sánchez

The advent of Large Language Models (LLMs) has created new opportunities for the automation of scientific research spanning both experimental processes and computational simulations. This study explores the feasibility of constructing an…

Artificial Intelligence · Computer Science 2025-01-16 Zhihan Liu , Yubo Chai , Jianfeng Li

Software testing research has traditionally relied on closed-world assumptions, such as finite state spaces, reproducible executions, and stable test oracles. However, many modern software systems operate under uncertainty, non-determinism,…

Software Engineering · Computer Science 2026-04-09 Yusaku Kato , Norihiro Yoshida , Erina Makihara , Katsuro Inoue