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Bacterial colonies are a well-known example of living active matter, exhibiting collective behaviors such as nematic alignment and collective motion that play an important role in the spread of microbial infections. While the underlying…

Tuberculosis persists as a global health crisis, especially in resource-limited populations and remote regions, with more than 10 million individuals newly infected annually. It stands as a stark symbol of inequity in public health.…

Image and Video Processing · Electrical Eng. & Systems 2025-03-12 Neel Patel , Alexander Wong , Ashkan Ebadi

The Devil Facial Tumour Disease (DFTD), a unique case of a transmissible cancer, had a devastating effect on its host, the Tasmanian Devil. Current estimates of its density are at roughly 20% of the pre-disease state, and single-population…

Populations and Evolution · Quantitative Biology 2018-06-15 Veronika Siska , Anders Eriksson , Bernhard Mehlig , Andrea Manica

Tuberculosis (TB) is a infectious global health challenge. Chest X-rays are a standard method for TB screening, yet many countries face a critical shortage of radiologists capable of interpreting these images. Machine learning offers an…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Denis Musinguzi , Andrew Katumba , Sudi Murindanyi

The basic process of the innate immune system when phagocyte (white blood cell) engulf or swallow a target particle (bacterium or dead cell), is called phagocytosis. We apply the phase field approach in the spirit of [1], that couples the…

Biological Physics · Physics 2021-11-15 Mohammad Abu Hamed , Alexander A. Nepomnyashchy

Tuberculosis is an infectious disease that is leading to the death of millions of people across the world. The mortality rate of this disease is high in patients suffering from immuno-compromised disorders. The early diagnosis of this…

Image and Video Processing · Electrical Eng. & Systems 2021-08-29 G Jignesh Chowdary , Suganya G , Premalatha M , Karunamurthy K

Understanding dynamics of an infectious disease helps in designing appropriate strategies for containing its spread in a population. Recent mathematical models are aimed at studying dynamics of some specific types of infectious diseases. In…

Dynamical Systems · Mathematics 2015-02-05 P. Raja Sekhara Rao , M. Naresh Kumar

Compartmental epidemiological models categorize individuals based on their disease status, such as the SEIRD model (Susceptible-Exposed-Infected-Recovered-Dead). These models determine the parameters that influence the magnitude of an…

Artificial Intelligence · Computer Science 2023-08-01 Alejandro Rodríguez-Arias , Amparo Alonso-Betanzos , Bertha Guijarro-Berdiñas , Noelia Sánchez-Marroño

Recently, a long-term model of HIV infection dynamics was developed to describe the entire time course of the disease. It consists of a large system of ODEs with many parameters, and is expensive to simulate. In the current paper, this…

Populations and Evolution · Quantitative Biology 2016-04-20 Tyson Loudon , Stephen Pankavich

Interaction patterns among individuals play vital roles in spreading infectious diseases. Understanding these patterns and integrating their impact in modeling diffusion dynamics of infectious diseases are important for epidemiological…

Social and Information Networks · Computer Science 2018-04-02 Md Shahzamal , Raja Jurdak , Bernard Mans , Ahmad El Shoghri , Frank De Hoog

The field of active matter explores the behaviors of self propelled agents out of equilibrium, with active suspensions, such as swimming bacteria in solutions, serving as impactful models. These systems exhibit spatio-temporal patterns akin…

Soft Condensed Matter · Physics 2025-08-26 Pratikshya Jena , Shradha Mishra

Cell-cell adhesion plays a vital role in the development and maintenance of multicellular organisms. One of its functions is regulation of cell migration, such as occurs, e.g. during embryogenesis or in cancer. In this work, we develop a…

Tissues and Organs · Quantitative Biology 2024-03-08 Anna Zhigun , Mabel Lizzy Rajendran

The maintenance of tissue and organ structures during dynamic homeostasis is often not well understood. In order for a system to be stable, cell renewal, cell migration and cell death must be finely balanced. Moreover, a tissue's shape must…

Tissues and Organs · Quantitative Biology 2022-05-11 Domenic P. J. Germano , Stuart T. Johnston , Edmund J. Crampin , James M. Osborne

In epidemiological modelings, the spectral radius of the next generation matrix evaluated at the trivial equilibrium was considered as the basic reproduction number. Also, the global stability of the trivial equilibrium point was determined…

Populations and Evolution · Quantitative Biology 2020-06-15 Hyun Mo Yang

Continuous-time birth-death-shift (BDS) processes are frequently used in stochastic modeling, with many applications in ecology and epidemiology. In particular, such processes can model evolutionary dynamics of transposable elements -…

Methodology · Statistics 2014-12-02 Jason Xu , Peter Guttorp , Midori Kato-Maeda , Vladimir N. Minin

The prediction of the behavior of the disease, the level of affectation in a population and the ways to control it are the most important aspects studied by epidemiology using tools such as historical data and mathematical models. So, our…

Dynamical Systems · Mathematics 2022-04-04 Jorge Andrés Ibáñez Huertas , Carlos Isaac Zainea Maya

Yet in spite of advances in hospital treatment, hospitals continue to be a breeding ground for several airborne diseases and for diseases that are transmitted through close contacts like SARS, methicillin-resistant Staphylococcus aureus…

Other Quantitative Biology · Quantitative Biology 2007-11-06 Fredrik Liljeros , Petter Holme , Johan Giesecke

Most spreading processes require spatial proximity between agents. The stationary state of spreading dynamics in a population of mobile agents thus depends on the interplay between the time and length scales involved in the epidemic process…

Statistical Mechanics · Physics 2024-03-05 Jorge P. Rodríguez , Matteo Paoluzzi , Demian Levis , Michele Starnini

Infectious disease dynamics operate across multiple biological scales, with within-host viral dynamics being a key driver of between-host transmission. However, while models that explicitly link these scales exist, none have been developed…

Applications · Statistics 2026-04-23 Dylan J. Morris , Lauren Kennedy , Andrew J. Black

We develop a spatially dependent generalisation to the Wells-Riley model and its extensions applied to COVID-19, that determines the infection risk due to airborne transmission of viruses. We assume that the concentration of infectious…

Quantitative Methods · Quantitative Biology 2021-05-19 Zechariah Lau , Ian M. Griffiths , Aaron English , Katerina Kaouri