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Motivation: Bioinformatics software often lacks graphical user interfaces (GUIs), which can limit its adoption by non-technical members of the scientific community. Web interfaces are a common alternative for building cross-platform GUIs,…

Software Engineering · Computer Science 2020-02-21 Andres Veidenberg , Ari Löytynoja

We report on our experiences in an e-government project for supporting the automatic generation of E-forms for services provided by local governments. The approach requires the integration of both the model-based user interface design…

Software Engineering · Computer Science 2020-03-19 Bedir Tekinerdogan , Namik Aktekin

Scientific Workflow Systems such as Galaxy and Nextflow are essential for scalable, reproducible, and automated bioinformatics analyses. However, developing and understanding scientific workflows remains challenging for many domain…

Software Engineering · Computer Science 2025-08-18 Khairul Alam , Banani Roy

There has been a widespread emergence of computing devices in the past few years that go beyond the capabilities of traditional desktop computers. These devices have varying input/output characteristics, modalities and interaction…

Human-Computer Interaction · Computer Science 2007-05-23 Mir Farooq Ali , Manuel A. Perez-Quinones , Marc Abrams

It is common practice for developers of user-facing software to transform a mock-up of a graphical user interface (GUI) into code. This process takes place both at an application's inception and in an evolutionary context as GUI changes…

Software Engineering · Computer Science 2018-07-30 Kevin Moran , Carlos Bernal-Cárdenas , Michael Curcio , Richard Bonett , Denys Poshyvanyk

Automating the synthesis of User Interfaces (UIs) plays a crucial role in enhancing productivity and accelerating the development lifecycle, reducing both development time and manual effort. Recently, the rapid development of Multimodal…

Software Engineering · Computer Science 2025-05-26 Yi Gui , Zhen Li , Zhongyi Zhang , Yao Wan , Dongping Chen , Hongyu Zhang , Yi Su , Bohua Chen , Xing Zhou , Wenbin Jiang , Xiangliang Zhang

Molecular dynamics (MD) simulations allow the exploration of the phase space of biopolymers through the integration of equations of motion of their constituent atoms. The analysis of MD trajectories often relies on the choice of collective…

Computational Physics · Physics 2017-05-11 Toni Giorgino , Alessandro Laio , Alex Rodriguez

Highly customized graphical user interfaces play a major role in today's software applications. There exist many technologies that support developing them. But these technologies demand writing a significant amount of unintuitive code to…

Software Engineering · Computer Science 2023-02-09 Samiyuru Menik , Sriyal Jayasinghe

The computer programs most users interact with daily are driven by a graphical user interface (GUI). However, many scientific applications are used with a command line interface (CLI) for the ease of development and increased flexibility…

Human-Computer Interaction · Computer Science 2008-06-03 N. C. Manoukis , E. C. Anderson

Computer-use agents that combine GUI interaction with structured API calls via the Model Context Protocol (MCP) show promise for automating software tasks. However, existing approaches lack a principled understanding of how agents should…

Artificial Intelligence · Computer Science 2026-04-14 Tiantian He , Yihang Chen , Keyue Jiang , Ka Yiu Lee , Kaiwen Zhou , Kun Shao , Shuai Wang

Workflows are a fundamental component of automation in enterprise platforms, enabling the orchestration of tasks, data processing, and system integrations. Despite being widely used, building workflows can be complex, often requiring manual…

Computer Vision and Pattern Recognition · Computer Science 2026-01-13 Patrice Bechard , Chao Wang , Amirhossein Abaskohi , Juan Rodriguez , Christopher Pal , David Vazquez , Spandana Gella , Sai Rajeswar , Perouz Taslakian

An early stage of developing user-facing applications is creating a wireframe to layout the interface. Once a wireframe has been created it is given to a developer to implement in code. Developing boiler plate user interface code is time…

Computer Vision and Pattern Recognition · Computer Science 2019-06-03 Alex Robinson

In this paper we describe EasyInterface, an open-source toolkit for rapid development of web-based graphical user interfaces (GUIs). This toolkit addresses the need of researchers to make their research prototype tools available to the…

Software Engineering · Computer Science 2017-02-02 Jesús Doménech , Samir Genaim , Einar Broch Johnsen , Rudolf Schlatte

In automated UI design generation, a key challenge is the lack of support for iterative processes, as most systems focus solely on end-to-end output. This stems from limited capabilities in interpreting design intent and a lack of…

Human-Computer Interaction · Computer Science 2025-10-30 Mingyue Yuan , Jieshan Chen , Yongquan Hu , Sidong Feng , Mulong Xie , Gelareh Mohammadi , Zhenchang Xing , Aaron Quigley

AI is growing increasingly capable of automatically generating user interfaces (GenUI) from user prompts. However, designing GenUI applications that enable users to discover diverse customizations while preserving GenUI's expressiveness…

Human-Computer Interaction · Computer Science 2026-01-27 Bryan Min , Peiling Jiang , Zhicheng Huang , Haijun Xia

With the widespread adoption of Graphical User Interface (GUI) agents for automating GUI interaction tasks, substantial research focused on improving GUI perception to ground task instructions into concrete action steps. However, the step…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Xuan Wang , Siyuan Su , Quantong Fu , Yongxiang Hu , Yangfan Zhou

Autonomous graphical user interface (GUI) agents aim to facilitate task automation by interacting with the user interface without manual intervention. Recent studies have investigated eliciting the capabilities of large language models…

Computation and Language · Computer Science 2024-06-10 Zhuosheng Zhang , Aston Zhang

In this paper, we describe a Graphical User Interface (GUI) designed to manage large quantities of image data of a biological system. After setting the design requirements for the system, we developed an ecology quantification GUI that…

Quantitative Methods · Quantitative Biology 2008-01-08 Nigel J. Burroughs , George D. Tsibidis , William Gaze , Liz Wellington

GUI agents drive applications through their visual interfaces instead of programmatic APIs, interacting with arbitrary software via taps, swipes, and keystrokes, reaching a long tail of applications that CLI-based agents cannot. Yet…

Machine Learning · Computer Science 2026-04-14 Fei Tang , Zhiqiong Lu , Boxuan Zhang , Weiming Lu , Jun Xiao , Yueting Zhuang , Yongliang Shen

The design process of user interfaces (UIs) often begins with articulating high-level design goals. Translating these high-level design goals into concrete design mock-ups, however, requires extensive effort and UI design expertise. To…

Human-Computer Interaction · Computer Science 2021-10-18 Forrest Huang , Gang Li , Xin Zhou , John F. Canny , Yang Li
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