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Current approaches to AI agent orchestration typically involve building multi-agent frameworks that manage context passing, memory, error handling, and step coordination through code. These frameworks work well for complex, concurrent…

Artificial Intelligence · Computer Science 2026-03-19 Jake Van Clief , David McDermott

This survey investigates how classical software design patterns can enhance the reliability and scalability of communication in Large Language Model (LLM)-driven agentic AI systems, focusing particularly on the Model Context Protocol (MCP).…

Software Engineering · Computer Science 2026-05-25 Anjana Sarkar , Soumyendu Sarkar

The Model Context Protocol (MCP) has emerged as a widely adopted mechanism for connecting large language models to external tools and resources. While MCP promises seamless extensibility and rich integrations, it also introduces a…

Cryptography and Security · Computer Science 2025-07-10 Zhihao Li , Kun Li , Boyang Ma , Minghui Xu , Yue Zhang , Xiuzhen Cheng

AI assistants can decompose multi-step workflows, but they do not natively speak industrial protocols such as Modbus, MQTT/Sparkplug B, or OPC UA, so this paper presents INDUSTRICONNECT, a prototype suite of Model Context Protocol (MCP)…

Software Engineering · Computer Science 2026-03-27 Melwin Xavier , Melveena Jolly , Vaisakh M A , Midhun Xavier

Model Context Protocol (MCP) have quickly become the interface layer between LLM agents and external tools, yet they also introduce unsafe data flows that existing analyzers handle poorly. Vulnerabilities manifest in two directions:…

Software Engineering · Computer Science 2026-05-11 Xinyi Hou , Yanjie Zhao , Haoyu Wang

Large Language Models (LLMs) are evolving from text generators into reasoning agents. This transition makes their ability to use external tools a critical capability. However, evaluating this skill presents a significant challenge. Existing…

Computation and Language · Computer Science 2025-10-14 Fei Lei , Yibo Yang , Wenxiu Sun , Dahua Lin

The Model Context Protocol (MCP), introduced by Anthropic, provides a standardized framework for artificial intelligence (AI) systems to interact with external data sources and tools in real-time. While MCP offers significant advantages for…

Cryptography and Security · Computer Science 2025-05-06 Vineeth Sai Narajala , Idan Habler

The Model Context Protocol (MCP) standardizes tool use for LLM-based agents and enable third-party servers. This openness introduces a security misalignment: agents implicitly trust tools exposed by potentially untrusted MCP servers.…

Cryptography and Security · Computer Science 2026-02-25 Zhenhong Zhou , Yuanhe Zhang , Hongwei Cai , Moayad Aloqaily , Ouns Bouachir , Linsey Pang , Prakhar Mehrotra , Kun Wang , Qingsong Wen

The Model Context Protocol (MCP) has emerged as a standard for connecting large language models (LLMs) with external tools. However, this MCP ecosystem introduces new security risks across hosts, servers, and registries. In this paper, we…

Cryptography and Security · Computer Science 2026-04-29 Xiaofan Li , Xing Gao

Bioinformatics tools are essential for complex computational biology tasks, yet their integration with emerging AI-agent frameworks is hindered by incompatible interfaces, heterogeneous input-output formats, and inconsistent parameter…

Quantitative Methods · Quantitative Biology 2025-10-03 Florensia Widjaja , Zhangtianyi Chen , Juexiao Zhou

As AI agents transition from research prototypes to enterprise production systems, the tool interfaces they consume remain rooted in human-oriented CRUD paradigms. This paper identifies five fundamental architectural mismatches between…

Artificial Intelligence · Computer Science 2026-05-12 Kai Pan

Effective multi-agent systems cannot be designed by selecting prompts or communication graphs in isolation. Agent behavior depends on the information an agent receives, while the usefulness of a communication edge depends on how the…

Artificial Intelligence · Computer Science 2026-05-28 Yi Ding , Zijie Xuan , Haowei Zhou , Zhenyu Ju , Xiaoxiao Dong , Jingwen Zhang , Xingyu Zhu , Leixin Sun , Haochi Zhang

Aiming at the problems of computational inefficiency and insufficient interpretability faced by large models in complex tasks such as multi-round reasoning and multi-modal collaboration, this study proposes a three-layer collaboration…

Computation and Language · Computer Science 2025-09-23 Luyan Zhang

Recent improvements in large language models (LLMs) have had a dramatic effect on capabilities and productivity across many disciplines involving critical thinking and writing. The development of the model context protocol (MCP) provides a…

The Model Context Protocol (MCP) plays a crucial role in extending the capabilities of Large Language Models (LLMs) by enabling integration with external tools and data sources. However, the standard MCP specification presents significant…

Cryptography and Security · Computer Science 2025-06-03 Manish Bhatt , Vineeth Sai Narajala , Idan Habler

Background: Large language models (LLMs) show promise in medicine, but their deployment in hospitals is limited by restricted access to electronic health record (EHR) systems. The Model Context Protocol (MCP) enables integration between…

Artificial Intelligence · Computer Science 2025-09-22 Kanato Masayoshi , Masahiro Hashimoto , Ryoichi Yokoyama , Naoki Toda , Yoshifumi Uwamino , Shogo Fukuda , Ho Namkoong , Masahiro Jinzaki

The ability of large language models (LLMs) to $``$learn in context$"$ based on the provided prompt has led to an explosive growth in their use, culminating in the proliferation of AI assistants such as ChatGPT, Claude, and Bard. These AI…

Computation and Language · Computer Science 2024-05-30 Namrata Shivagunde , Vladislav Lialin , Sherin Muckatira , Anna Rumshisky

We present AgentOptics, an agentic AI framework for high-fidelity, autonomous optical system control built on the Model Context Protocol (MCP). AgentOptics interprets natural language tasks and executes protocol-compliant actions on…

The rise of tool-using Large Language Model (LLM) agents, standardized by protocols like the Model Context Protocol (MCP), has unlocked unprecedented autonomous execution capabilities for LLM Agents by integrating external open-domain…

Cryptography and Security · Computer Science 2026-05-26 Shi Liu , Xuehai Tang , Xikang Yang , Liang Lin , Biyu Zhou , Wenjie Xiao , Wantao Liu

Architectural code smells erode software maintainability and are costly to repair manually, yet unlike localized bugs, they require cross-module reasoning about design intent that challenges both developers and automated tools. While large…

Software Engineering · Computer Science 2026-05-13 Ion George Dinu , Marian Cristian Mihăescu , Traian Rebedea
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