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Related papers: Viscous vertex model for active epithelial tissues

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In order to describe two-dimensionally packed cells in epithelial tissues both mathematically and physically, there have been developed several sorts of geometrical models, such as the vertex model, the finite element model, the…

Biological Physics · Physics 2014-11-19 Yukitaka Ishimoto , Yoshihiro Morishita

As two-dimensional fluid shells, lipid bilayer membranes resist bending and stretching but are unable to sustain shear stresses. This property gives membranes the ability to adopt dramatic shape changes. In this paper, a finite element…

Biological Physics · Physics 2009-11-13 Lin Ma , William S. Klug

We show here a general model of phase separation in isotropic condensed matter, namely, a viscoelastic model. We propose that the bulk mechanical relaxation modulus that has so far been ignored in previous theories plays an important role…

Soft Condensed Matter · Physics 2009-10-30 Hajime Tanaka

Recent experiments have shown that when a near-hemispherical lipid vesicle attached to a solid surface is subjected to a simple shear flow it exhibits a pattern of membrane circulation much like a dipole vortex. This is in marked contrast…

Fluid Dynamics · Physics 2012-08-14 Francis G. Woodhouse , Raymond E. Goldstein

The mechanical properties of tissues play an essential role for all tissue properties such as cell division, and differentiation or morphogenesis. Here, we study theoretically the rheology of 2-dimensional epithelial tissues described by a…

Soft Condensed Matter · Physics 2023-12-18 Doron Grossman , Jean-Francois Joanny

The shear viscosity in the dilute regime of a model for confined granular matter is studied by simulations and kinetic theory. The model consists on projecting into two dimensions the motion of vibrofluidized granular matter in shallow…

Statistical Mechanics · Physics 2015-06-22 Rodrigo Soto , Dino Risso , Ricardo Brito

We introduce an Active Vertex Model (AVM) for cell-resolution studies of the mechanics of confluent epithelial tissues consisting of tens of thousands of cells, with a level of detail inaccessible to similar methods. The AVM combines the…

Biological Physics · Physics 2016-12-20 Daniel L. Barton , Silke Henkes , Cornelis J. Weijer , Rastko Sknepnek

We consider the initial-boundary value problem for the incompressible two-dimensional micropolar fluid model with angular viscosity in the upper half-plane. This model describes the motion of viscous fluids with microstructure. The global…

Analysis of PDEs · Mathematics 2025-08-27 Yinghui Wang , Weihao Zhang

We study the existence of quasistatic evolutions for a family of gradient damage models which take into account fatigue, that is the process of weakening in a material due to repeated applied loads. The main feature of these models is the…

Analysis of PDEs · Mathematics 2020-09-24 Roberto Alessi , Vito Crismale , Gianluca Orlando

The rheology of biological tissue is key to processes such as embryo development, wound healing and cancer metastasis. Vertex models of confluent tissue monolayers have uncovered a spontaneous liquid-solid transition tuned by cell shape;…

Soft Condensed Matter · Physics 2023-10-02 Suzanne M. Fielding , James O. Cochran , Junxiang Huang , Dapeng Bi , M. Cristina Marchetti

Embryonic tissues deform across broad spatial and temporal scales and relax stress through active rearrangements. A quantitative link between cell-scale activity, spatial forcing, and emergent tissue-scale mechanics remains incomplete.…

Biological Physics · Physics 2025-12-18 Sahil Islam , Mohd. Suhail Rizvi , Anupam Gupta

A controllable soft solid is realised in vortex matter in a type II superconductor. The two-dimensional unit cell area can be varied by a factor of $10^4$ in the solid phase, without a change of crystal symmetry offering easy exploration of…

Soft Condensed Matter · Physics 2019-04-11 Jonathan S. Watkins , Nicola K. Wilkin

We propose a two-dimensional flow model of a viscous fluid between two close moving surfaces. We show, using a formal asymptotic expansion of the solution, that its asymptotic behavior, when the distance between the two surfaces tends to…

Analysis of PDEs · Mathematics 2023-08-01 José M. Rodríguez , Raquel Taboada-Vázquez

We present a continuum model of the coupling between cells and substrate that accounts for some of the observed substrate-stiffness dependence of cell properties. The cell is modeled as an elastic active gel, adapting recently developed…

Cell Behavior · Quantitative Biology 2015-05-28 Shiladitya Banerjee , M. Cristina Marchetti

This paper concerns the dynamics of a layer of incompressible viscous fluid lying above a rigid plane and with an upper boundary given by a free surface. The fluid is subject to a constant external force with a horizontal component, which…

Analysis of PDEs · Mathematics 2018-03-14 Ian Tice

Consider the dynamics of a layer of viscous incompressible fluid under the influence of gravity. The upper boundary is a free boundary with the effect of surface tension taken into account, and the lower boundary is a fixed boundary on…

Analysis of PDEs · Mathematics 2019-11-12 Yanjin Wang , Zhouping Xin

Cell-based, mathematical modeling of collective cell behavior has become a prominent tool in developmental biology. Cell-based models represent individual cells as single particles or as sets of interconnected particles, and predict the…

Cell Behavior · Quantitative Biology 2019-03-12 Henri B. Wolff , Lance A. Davidson , Roeland M. H. Merks

We use a three-dimensional formulation of the cell vertex model to describe the mechanical properties of a confluent planar monolayer of prismatic cells. Treating cell height as a degree of freedom, we reduce the model to a two-dimensional…

Biological Physics · Physics 2025-08-29 Natasha Cowley , Sarah Woolner , Oliver E. Jensen

The structure of the boundary layer region between the disc and a comparatively slowly rotating star is studied using a causal prescription for viscosity. The vertically integrated viscous stress relaxes towards its equilibrium value on a…

Astrophysics · Physics 2009-10-30 W. Kley , J. C. B. Papaloizou

Vertex models are a popular approach to modeling the mechanical and dynamical properties of dense biological tissues, describing the tissue as a network of connected polygons representing the cells. Recently a class of two-dimensional…

Soft Condensed Matter · Physics 2017-08-14 Daniel M. Sussman , Matthias Merkel