Related papers: Limits of Kernelization and Parametrization for Ph…
The perfect phylogeny is one of the most used models in different areas of computational biology. In this paper we consider the problem of the Persistent Perfect Phylogeny (referred as P-PP) recently introduced to extend the perfect…
Phylogenetic networks generalize phylogenetic trees by allowing reticulate evolutionary events such as horizontal gene transfer and hybridization. Among the many subclasses of phylogenetic networks, orchard networks have attracted…
We study the Steiner Tree problem on the intersection graph of most natural families of geometric objects, e.g., disks, squares, polygons, etc. Given a set of $n$ objects in the plane and a subset $T$ of $t$ terminal objects, the task is to…
We study the minimum diameter spanning tree problem under the reload cost model (DIAMETER-TREE for short) introduced by Wirth and Steffan (2001). In this problem, given an undirected edge-colored graph $G$, reload costs on a path arise at a…
A graph $H$ is {\em $p$-edge colorable} if there is a coloring $\psi: E(H) \rightarrow \{1,2,\dots,p\}$, such that for distinct $uv, vw \in E(H)$, we have $\psi(uv) \neq \psi(vw)$. The {\sc Maximum Edge-Colorable Subgraph} problem takes as…
We study efficient preprocessing for the undirected Feedback Vertex Set problem, a fundamental problem in graph theory which asks for a minimum-sized vertex set whose removal yields an acyclic graph. More precisely, we aim to determine for…
Distance-based phylogenetic algorithms attempt to solve the NP-hard least squares phylogeny problem by mapping an arbitrary dissimilarity map representing biological data to a tree metric. The set of all dissimilarity maps is a Euclidean…
Many graph problems were first shown to be fixed-parameter tractable using the results of Robertson and Seymour on graph minors. We show that the combination of finite, computable, obstruction sets and efficient order tests is not just one…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
Makespan minimization (on parallel identical or unrelated machines) is arguably the most natural and studied scheduling problem. A common approach in practical algorithm design is to reduce the size of a given instance by a fast…
We consider the parameterized complexity of the problem of tracking shortest s-t paths in graphs, motivated by applications in security and wireless networks. Given an undirected and unweighted graph with a source s and a destination t,…
A decision problem is called parameterized if its input is a pair of strings. One of these strings is referred to as a parameter. The problem: given a propositional logic program P and a non-negative integer k, decide whether P has a stable…
We investigate fine-grained algorithmic aspects of identification problems in graphs and set systems, with a focus on Locating-Dominating Set and Test Cover. We prove the (tight) conditional lower bounds for these problems when…
A graph is $d$-orientable if its edges can be oriented so that the maximum in-degree of the resulting digraph is at most $d$. $d$-orientability is a well-studied concept with close connections to fundamental graph-theoretic notions and…
The NP-complete $k$-Path problem asks whether a given undirected graph has a (simple) path of length at least $k$. We prove that $k$-Path has polynomial-size Turing kernels when restricted to planar graphs, graphs of bounded degree,…
In Defective Coloring we are given a graph $G = (V, E)$ and two integers $\chi_d, \Delta^*$ and are asked if we can partition $V$ into $\chi_d$ color classes, so that each class induces a graph of maximum degree $\Delta^*$. We investigate…
Parameterized complexity seeks to use input structure to obtain faster algorithms for NP-hard problems. This has been most successful for graphs of low treewidth: Many problems admit fast algorithms relative to treewidth and many of them…
In parameterized complexity, it is well-known that a parameterized problem is fixed-parameter tractable if and only if it has a kernel - an instance equivalent to the input instance, whose size is just a function of the parameter. The size…
We consider the Minimum Coverage Kernel problem: given a set $B$ of $d$-dimensional boxes, find a subset of $B$ of minimum size covering the same region as $B$. This problem is $\mathsf{NP}$-hard, but as for many $\mathsf{NP}$-hard problems…
An important result in the study of polynomial-time preprocessing shows that there is an algorithm which given an instance (G,k) of Vertex Cover outputs an equivalent instance (G',k') in polynomial time with the guarantee that G' has at…