Related papers: Limits of Kernelization and Parametrization for Ph…
We study the Steiner Tree problem on unit disk graphs. Given a $n$ vertex unit disk graph $G$, a subset $R\subseteq V(G)$ of $t$ vertices and a positive integer $k$, the objective is to decide if there exists a tree $T$ in $G$ that spans…
The Identifying Code (IC) problem seeks a vertex subset whose intersection with every vertex's closed neighborhood is unique, enabling fault detection in multiprocessor systems and practical uses in identity verification, environmental…
Subset selection problems ask for a small, diverse yet representative subset of the given data. When pairwise similarities are captured by a kernel, the determinants of submatrices provide a measure of diversity or independence of items…
We study parameterized and approximation algorithms for a variant of Set Cover, where the universe of elements to be covered consists of points in the plane and the sets with which the points should be covered are segments. We call this…
For a finite collection of connected graphs $\mathcal{F}$, the $\mathcal{F}$-MINOR-DELETION problem consists in, given a graph $G$ and an integer $\ell$, deciding whether $G$ contains a vertex set of size at most $\ell$ whose removal…
In this work, we initiate the complexity study of Biclique Contraction and Balanced Biclique Contraction. In these problems, given as input a graph G and an integer k, the objective is to determine whether one can contract at most k edges…
Optimization problems consist of either maximizing or minimizing an objective function. Instead of looking for a maximum solution (resp. minimum solution), one can find a minimum maximal solution (resp. maximum minimal solution). Such…
Orthology and paralogy relations are often inferred by methods based on gene similarity, which usually yield a graph depicting the relationships between gene pairs. Such relation graphs are known to frequently contain errors, as they cannot…
The knapsack problem (KP) is a very famous NP-hard problem in combinatorial optimization. Also its generalization to multiple dimensions named d-dimensional knapsack problem (d-KP) and to multiple knapsacks named multiple knapsack problem…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
In the Determinant Maximization problem, given an $n\times n$ positive semi-definite matrix $\bf{A}$ in $\mathbb{Q}^{n\times n}$ and an integer $k$, we are required to find a $k\times k$ principal submatrix of $\bf{A}$ having the maximum…
The propositional planning problem is a notoriously difficult computational problem. Downey et al. (1999) initiated the parameterized analysis of planning (with plan length as the parameter) and B\"ackstr\"om et al. (2012) picked up this…
In the problem Fault-Tolerant Path (FTP), we are given an edge-weighted directed graph G = (V, E), a subset U \subseteq E of vulnerable edges, two vertices s, t \in V, and integers k and \ell. The task is to decide whether there exists a…
Let $\mathcal{D}$ be a set family that is the solution domain of some combinatorial problem. The \emph{max-min diversification problem on $\mathcal{D}$} is the problem to select $k$ sets from $\mathcal{D}$ such that the Hamming distance…
Tree Containment is a fundamental problem in phylogenetics useful for verifying a proposed phylogenetic network, representing the evolutionary history of certain species. Tree Containment asks whether the given phylogenetic tree (for…
It has recently been shown that the NP-hard problem of calculating the minimum number of hybridization events that is needed to explain a set of rooted binary phylogenetic trees by means of a hybridization network is fixed-parameter…
This paper categorizes the parameterized complexity of the algorithmic problems Perfect Phylogeny and Triangulating Colored Graphs when parameterized by the number of genes and colors, respectively. We show that they are complete for the…
For a family of graphs $\cal F$, the $\mathcal{F}$-Contraction problem takes as an input a graph $G$ and an integer $k$, and the goal is to decide if there exists $S \subseteq E(G)$ of size at most $k$ such that $G/S$ belongs to $\cal F$.…
Phylogenies are commonly used to represent the evolutionary relationships between species, and often these phylogenies are equipped with edge lengths that indicate degrees of evolutionary difference. Given such a phylogeny, a popular…
We show that under mild assumptions for a problem whose solutions admit a dynamic programming-like recurrence relation, we can still find a solution under additional packing constraints, which need to be satisfied approximately. The number…