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The recently developed energy conserving semi-implicit method (ECsim) for PIC simulation is applied to multiple scale problems where the electron-scale physics needs to be only partially retained and the interest is on the macroscopic or…

Computational Physics · Physics 2017-05-24 Giovanni Lapenta , Diego Gonzalez-Herrero , Elisabetta Boella

Time-resolved spectroscopy is a powerful tool for probing electron dynamics in molecules and solids, revealing transient phenomena on sub-femtosecond timescales. The interpretation of experimental results is often enhanced by parallel…

Computational Physics · Physics 2025-05-02 Cian Reeves , Michael Kurniawan , Yuanran Zhu , Nikil Jampana , Jacob Brown , Chao Yang , Khaled Ibrahim , Vojtech Vlcek

We present the open-source image processing software package PySAP (Python Sparse data Analysis Package) developed for the COmpressed Sensing for Magnetic resonance Imaging and Cosmology (COSMIC) project. This package provides a set of…

Instrumentation and Methods for Astrophysics · Physics 2020-07-03 S. Farrens , A. Grigis , L. El Gueddari , Z. Ramzi , Chaithya G. R. , S. Starck , B. Sarthou , H. Cherkaoui , P. Ciuciu , J. -L. Starck

We present a fast active microrheology technique exploring the phase response of a microscopic probe particle trapped in a linear viscoelastic fluid using optical tweezers under an external perturbation. Thus, we experimentally determine…

Applied Physics · Physics 2020-01-08 Shuvojit Paul , Avijit Kundu , Ayan Banerjee

Twisted 2D materials exhibit unique vibrational modes called moir\'e phonons, which arise from the moir\'e superlattice. Here, we demonstrate atom-by-atom imaging of phasons, an ultrasoft class of moir\'e phonons in twisted bilayer WSe2.…

The kinetic damping mechanism of low frequency transverse perturbations propagating parallel to the magnetic field in a magnetized warm electron plasma is simulated by means of electromagnetic (EM) Vlasov simulations. The short-time-scale…

Plasma Physics · Physics 2022-10-26 Anjan Paul , Devendra Sharma

X-ray photoelectron diffraction is a powerful tool for determining the structure of clean and adsorbate-covered surfaces. Extending the technique into the ultrafast time domain will open the door to studies as diverse as the direct…

High energy electron beams can now be routinely focused to 1-2 {\AA} and offer the ability to obtain vibrational information from materials using monochromated electron energy-loss spectroscopy (EELS) in a scanning transmission electron…

Materials Science · Physics 2021-07-13 Kartik Venkatraman , Peter A. Crozier

Behavioural differences across organisms, whether healthy or pathological, are closely tied to the structure of their neural circuits. Yet, the fine-scale synaptic changes that give rise to these variations remain poorly understood, in part…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Samia Mohinta , Daniel Franco-Barranco , Shi Yan Lee , Albert Cardona

Biomedical audio signals, such as phonocardiograms (PCG), are inherently rhythmic and contain diagnostic information in both their spectral (tonal) and temporal domains. Standard 2D spectrograms provide rich spectral features but compromise…

Audio and Speech Processing · Electrical Eng. & Systems 2025-09-30 Md. Saiful Bari Siddiqui , Utsab Saha

Theoretical calculations are contributing a significantly higher proportion of data to contemporary spectroscopic databases, which have traditionally relied on experimental observations and semi-empirical models. It is now a common…

Ultrasound poroelastography is a cost-effective non-invasive imaging technique, which is able to reconstruct several mechanical parameters of cancer and normal tissue such as Young's modulus, Poisson's ratio, interstitial permeability and…

Signal Processing · Electrical Eng. & Systems 2019-04-17 Md Tauhidul Islam , Raffaella Righetti

Revealing the structure of complex biological macromolecules, such as proteins, is an essential step for understanding the chemical mechanisms that determine the diversity of their functions. Synchrotron based x-ray crystallography and…

Ptychography is a scanning coherent diffraction imaging technique successfully applied in the electron, visible and x-ray regimes. One of the distinct features of ptychography with respect to other coherent diffraction techniques is its…

Despite vibrational properties being critical for the ab initio prediction of the finite temperature stability and transport properties of solids, their inclusion in ab initio materials repositories has been hindered by expensive…

Physics-driven discovery in an autonomous experiment has emerged as a dream application of machine learning in physical sciences. Here we develop and experimentally implement a deep kernel learning workflow combining the correlative…

Materials Science · Physics 2022-11-24 Kevin M. Roccapriore , Sergei V. Kalinin , Maxim Ziatdinov

Fluorescence spectroscopy is an image correlation technique to analyze and characterize the molecular dynamics from a sequence of fluorescence images. Many image correlation techniques have been developed for different applications [1]. But…

Quantitative Methods · Quantitative Biology 2017-10-24 C. Chen , P. Paul-Gilloteaux , T. Vignaud , J. Salamero , F. Waharte

We present an ultrafast coherent spectroscopy data acquisition scheme that samples slices of the time domain used in multidimensional coherent spectroscopy to achieve faster data collection than full spectra. We derive analytical…

Instrumentation and Detectors · Physics 2018-12-26 Geoffrey M. Diederich , Travis M. Autry , Mark E. Siemens

Single-particle electron microscopy is a modern technique that biophysicists employ to learn the structure of proteins. It yields data that consist of noisy random projections of the protein structure in random directions, with the added…

Applications · Statistics 2012-03-01 Victor M. Panaretos , Kjell Konis

Large particle sorters have potential applications in sorting microplastics and large biomaterials (>50 micrometer), such as tissues, spheroids, organoids, and embryos. Though great advancements have been made in image-based sorting of…