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Background: We have previously demonstrated that cortical folding across mammalian species follows a universal scaling law that can be derived from a simple theoretical model. The same scaling law has also been shown to hold across brains…

Neurons and Cognition · Quantitative Biology 2020-06-01 Yujiang Wang , Joe Necus , Luis Peraza Rodriguez , Peter Neal Taylor , Bruno Mota

Graph Neural Networks (GNNs) are well-suited for learning on homophilous graphs, i.e., graphs in which edges tend to connect nodes of the same type. Yet, achievement of consistent GNN performance on heterophilous graphs remains an open…

Machine Learning · Computer Science 2023-08-30 Andrea Cavallo , Claas Grohnfeldt , Michele Russo , Giulio Lovisotto , Luca Vassio

To better understand DNA's 3D folding in cell nuclei, researchers developed chromosome capture methods such as Hi-C that measure the contact frequencies between all DNA segment pairs across the genome. As Hi-C data sets often are massive,…

Biological Physics · Physics 2023-11-14 Anton Holmgren , Dolores Bernenko , Ludvig Lizana

Contrastive self-supervised learning has recently benefited fMRI classification with inductive biases. Its weak label reliance prevents overfitting on small medical datasets and tackles the high intraclass variances. Nonetheless, existing…

Machine Learning · Computer Science 2022-07-19 Xuesong Wang , Lina Yao , Islem Rekik , Yu Zhang

The connectome, a map of the structural and/or functional connections in the brain, provides a complex representation of the neurobiological phenotypes on which it supervenes. This information-rich data modality has the potential to…

Multimodal neuroimaging modeling has becomes a widely used approach but confronts considerable challenges due to heterogeneity, which encompasses variability in data types, scales, and formats across modalities. This variability…

Neurons and Cognition · Quantitative Biology 2025-04-15 Gang Qu , Ziyu Zhou , Vince D. Calhoun , Aiying Zhang , Yu-Ping Wang

Automatic and accurate segmentation of brain MR images throughout the human lifespan into tissue and structure is crucial for understanding brain development and diagnosing diseases. However, challenges arise from the intricate variations…

Image and Video Processing · Electrical Eng. & Systems 2024-08-01 Lin Teng , Zihao Zhao , Jiawei Huang , Zehong Cao , Runqi Meng , Feng Shi , Dinggang Shen

Population analyses of functional connectivity have provided a rich understanding of how brain function differs across time, individual, and cognitive task. An important but challenging task in such population analyses is the identification…

Social and Information Networks · Computer Science 2020-08-19 James D. Wilson , Melanie Baybay , Rishi Sankar , Paul Stillman , Abbie M. Popa

Understanding how brain structure and function interact is key to explaining intelligence yet modeling them jointly is challenging as the structural and functional connectome capture complementary aspects of organization. We introduced…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Badhan Mazumder , Sir-Lord Wiafe , Aline Kotoski , Vince D. Calhoun , Dong Hye Ye

Learning inter-image similarity is crucial for 3D medical images self-supervised pre-training, due to their sharing of numerous same semantic regions. However, the lack of the semantic prior in metrics and the semantic-independent variation…

Computer Vision and Pattern Recognition · Computer Science 2023-03-03 Yuting He , Guanyu Yang , Rongjun Ge , Yang Chen , Jean-Louis Coatrieux , Boyu Wang , Shuo Li

Vision-language models (VLMs) achieve strong multimodal performance, yet how computation is organized across populations of neurons remains poorly understood. In this work, we study VLMs through the lens of neural topology, representing…

Computer Vision and Pattern Recognition · Computer Science 2026-03-31 Haoyu He , Yue Zhuo , Yu Zheng , Qi R. Wang

Image landmark detection aims to automatically identify the locations of predefined fiducial points. Despite recent success in this field, higher-ordered structural modeling to capture implicit or explicit relationships among anatomical…

Computer Vision and Pattern Recognition · Computer Science 2020-12-09 Weijian Li , Yuhang Lu , Kang Zheng , Haofu Liao , Chihung Lin , Jiebo Luo , Chi-Tung Cheng , Jing Xiao , Le Lu , Chang-Fu Kuo , Shun Miao

The brain structural connectome is generated by a collection of white matter fiber bundles constructed from diffusion weighted MRI (dMRI), acting as highways for neural activity. There has been abundant interest in studying how the…

Methodology · Statistics 2022-11-03 Didong Li , Phuc Nguyen , Zhengwu Zhang , David B Dunson

Modeling human cognitive states is essential for advanced artificial intelligence. Existing Large Language Models (LLMs) mainly address isolated tasks such as emotion analysis or stance detection, and fail to capture interactions among…

Computation and Language · Computer Science 2026-04-21 Lin Zhong , Siyu Zhu , Zizhen Yuan , Jinhao Cui , Xinyang Zhao , Lingzhi Wang , Hao Chen , Qing Liao

One of the greatest scientific challenges in network neuroscience is to create a representative map of a population of heterogeneous brain networks, which acts as a connectional fingerprint. The connectional brain template (CBT), also named…

Neurons and Cognition · Quantitative Biology 2022-04-12 Nada Chaari , Hatice Camgoz Akdag , Islem Rekik

Higher-order connectivity in complex systems described by simplexes of different orders provides a geometry for simplex-based dynamical variables and interactions. Simplicial complexes that constitute a functional geometry of the human…

Neurons and Cognition · Quantitative Biology 2020-06-19 Miroslav Andjelkovic , Bosiljka Tadic , Roderick Melnik

A mathematical model of figure-ground articulation is presented, taking into account both local and global gestalt laws. The model is compatible with the functional architecture of the primary visual cortex (V1). Particularly the local…

Computer Vision and Pattern Recognition · Computer Science 2016-08-30 Marta Favali , Giovanna Citti , Alessandro Sarti

Bone metastasis analysis is a significant challenge in pathology and plays a critical role in determining patient quality of life and treatment strategies. The microenvironment and specific tissue structures are essential for pathologists…

Computer Vision and Pattern Recognition · Computer Science 2025-01-29 Yuxuan Chen , Jiawen Li , Huijuan Shi , Yang Xu , Tian Guan , Lianghui Zhu , Yonghong He , Anjia Han

In this paper, we propose a novel graph convolutional network architecture, Graph Stacked Hourglass Networks, for 2D-to-3D human pose estimation tasks. The proposed architecture consists of repeated encoder-decoder, in which…

Computer Vision and Pattern Recognition · Computer Science 2021-03-31 Tianhan Xu , Wataru Takano

Functional connectivity analysis yields powerful insights into our understanding of the human brain. Group-wise functional community detection aims to partition the brain into clusters, or communities, in which functional activity is…

Computer Vision and Pattern Recognition · Computer Science 2016-11-22 Nathan D. Cahill , Harmeet Singh , Chao Zhang , Daryl A. Corcoran , Alison M. Prengaman , Paul S. Wenger , John F. Hamilton , Peter Bajorski , Andrew M. Michael