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Related papers: MCP-Atlas: A Large-Scale Benchmark for Tool-Use Co…

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Large Language Model (LLM) agents are rapidly emerging as powerful systems for automating tasks across domains. Yet progress in the open-source community is constrained by the lack of high quality permissively licensed tool-agentic training…

Machine Learning · Computer Science 2025-10-02 Zhangchen Xu , Adriana Meza Soria , Shawn Tan , Anurag Roy , Ashish Sunil Agrawal , Radha Poovendran , Rameswar Panda

We present AgentOptics, an agentic AI framework for high-fidelity, autonomous optical system control built on the Model Context Protocol (MCP). AgentOptics interprets natural language tasks and executes protocol-compliant actions on…

Bioinformatics web servers are critical resources in modern biomedical research, facilitating interactive exploration of datasets through custom-built interfaces with rich visualization capabilities. However, this human-centric design…

Other Quantitative Biology · Quantitative Biology 2026-02-25 Matthias Flotho , Ian Ferenc Diks , Philipp Flotho , Leidy-Alejandra G. Molano , Pascal Hirsch , Andreas Keller

As Agentic AI gain mainstream adoption, the industry invests heavily in model capabilities, achieving rapid leaps in reasoning and quality. However, these systems remain largely confined to data silos, and each new integration requires…

Cryptography and Security · Computer Science 2025-05-20 Sonu Kumar , Anubhav Girdhar , Ritesh Patil , Divyansh Tripathi

Large Language Models (LLMs) have evolved into AI agents that interact with external tools and environments to perform complex tasks. The Model Context Protocol (MCP) has become the de facto standard for connecting agents with such…

Cryptography and Security · Computer Science 2026-04-27 Christoph Bühler , Matteo Biagiola , Luca Di Grazia , Guido Salvaneschi

Large language model (LLM)-based AI agents extend LLM capabilities by enabling access to tools such as data sources, APIs, search engines, code sandboxes, and even other agents. While this empowers agents to perform complex tasks, LLMs may…

Software Engineering · Computer Science 2026-01-14 Aarya Doshi , Yining Hong , Congying Xu , Eunsuk Kang , Alexandros Kapravelos , Christian Kästner

Long-context language models now advertise context windows up to millions of tokens, yet evaluations typically report a single length or a narrow task family, masking two failure modes: performance can collapse as length grows, and strong…

Large language models (LLMs) can now access a wide range of external tools, thanks to the Model Context Protocol (MCP). This greatly expands their abilities as various agents. However, LLMs rely entirely on the text descriptions of tools to…

Artificial Intelligence · Computer Science 2025-09-23 Kazem Faghih , Wenxiao Wang , Yize Cheng , Siddhant Bharti , Gaurang Sriramanan , Sriram Balasubramanian , Parsa Hosseini , Soheil Feizi

Agentic workflows driven by large language models (LLMs) are increasingly applied to Building Information Modelling (BIM), enabling natural-language retrieval, modification and generation of IFC models. Recent work has begun adopting the…

Other Computer Science · Computer Science 2026-03-31 Tobias Heimig-Elschner , Changyu Du , Anna Scheuvens , André Borrmann , Jakob Beetz

Large language models (LLMs) have displayed massive improvements in reasoning and decision-making skills and can hold natural conversations with users. Many recent works seek to augment LLM-based assistants with external tools so they can…

Computation and Language · Computer Science 2023-11-21 Nicholas Farn , Richard Shin

Large language models (LLMs) increasingly rely on external tools and APIs to execute complex tasks specified in natural language. Evaluating such tool calling capabilities in realistic enterprise settings is challenging: APIs are often…

Software Engineering · Computer Science 2026-01-27 Benjamin Elder , Anupama Murthi , Jungkoo Kang , Ankita Rajaram Naik , Kiran Kate , Kinjal Basu , Danish Contractor

Healthcare AI systems have historically faced challenges in merging contextual reasoning, long-term state management, and human-verifiable workflows into a cohesive framework. This paper introduces a completely innovative architecture and…

Artificial Intelligence · Computer Science 2025-12-08 Zag ElSayed , Craig Erickson , Ernest Pedapati

The development of autonomous machine learning (ML) agents capable of end-to-end data science workflows represents a significant frontier in artificial intelligence. These agents must orchestrate complex sequences of data analysis, feature…

Machine Learning · Computer Science 2026-02-24 Yaswanth Chittepu , Raghavendra Addanki , Tung Mai , Anup Rao , Branislav Kveton

Significant focus has been placed on integrating large language models (LLMs) with various tools in developing general-purpose agents. This poses a challenge to LLMs' tool-use capabilities. However, there are evident gaps between existing…

Computation and Language · Computer Science 2024-11-25 Jize Wang , Zerun Ma , Yining Li , Songyang Zhang , Cailian Chen , Kai Chen , Xinyi Le

The rapid development of LLMs coupled with the introduction of Model Context Protocol (MCP) has revolutionized how intelligent agents interact with APIs through deterministic and structured methods \cite{ModelContextProtocolIntro2025}.…

Software Engineering · Computer Science 2026-05-28 Aditya Pujara , Xiaogang Zhu , Hsiang-Ting Chen

As AI agents transition from research prototypes to enterprise production systems, the tool interfaces they consume remain rooted in human-oriented CRUD paradigms. This paper identifies five fundamental architectural mismatches between…

Artificial Intelligence · Computer Science 2026-05-12 Kai Pan

The Maximum Clique Problem (MCP) is a foundational NP-hard problem with wide-ranging applications, yet no single algorithm consistently outperforms all others across diverse graph instances. This underscores the critical need for…

Machine Learning · Computer Science 2025-12-09 Xiang Li , Shanshan Wang , Chenglong Xiao

While Large Language Models (LLMs) have evolved into tool-using agents, they remain brittle in long-horizon interactions. Unlike mathematical reasoning where errors are often rectifiable via backtracking, tool-use failures frequently induce…

Artificial Intelligence · Computer Science 2026-03-17 Shengda Fan , Xuyan Ye , Yupeng Huo , Zhi-Yuan Chen , Yiju Guo , Shenzhi Yang , Wenkai Yang , Shuqi Ye , Jingwen Chen , Haotian Chen , Xin Cong , Yankai Lin

The Model Context Protocol (MCP) plays a crucial role in extending the capabilities of Large Language Models (LLMs) by enabling integration with external tools and data sources. However, the standard MCP specification presents significant…

Cryptography and Security · Computer Science 2025-06-03 Manish Bhatt , Vineeth Sai Narajala , Idan Habler

The rapid expansion of interconnected devices, autonomous systems, and AI applications has created severe fragmentation in adaptive transport systems, where diverse protocols and context sources remain isolated. This survey provides the…