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Sample efficiency is a fundamental challenge in de novo molecular design. Ideally, molecular generative models should learn to satisfy a desired objective under minimal oracle evaluations (computational prediction or wet-lab experiment).…

Biomolecules · Quantitative Biology 2023-05-26 Jeff Guo , Philippe Schwaller

Purpose: This study aims to address the challenges of controlling unstable and nonlinear systems by proposing an adaptive PID controller based on predictive reinforcement learning (PRL-PID), where the PRL-PID combines the advantages of both…

Systems and Control · Electrical Eng. & Systems 2025-06-11 Chaoqun Ma , Zhiyong Zhang

Human-aligned AI is a critical component of co-creativity, as it enables models to accurately interpret human intent and generate controllable outputs that align with design goals in collaborative content creation. This direction is…

Artificial Intelligence · Computer Science 2025-08-14 In-Chang Baek , Seoyoung Lee , Sung-Hyun Kim , Geumhwan Hwang , KyungJoong Kim

Online Multi-Agent Reinforcement Learning (MARL) is a prominent framework for efficient agent coordination. Crucially, enhancing policy expressiveness is pivotal for achieving superior performance. Diffusion-based generative models are…

Artificial Intelligence · Computer Science 2026-02-23 Zhuoran Li , Hai Zhong , Xun Wang , Qingxin Xia , Lihua Zhang , Longbo Huang

Generating molecules that bind to specific proteins is an important but challenging task in drug discovery. Previous works usually generate atoms in an auto-regressive way, where element types and 3D coordinates of atoms are generated one…

Biomolecules · Quantitative Biology 2024-07-16 Haitao Lin , Yufei Huang , Odin Zhang , Siqi Ma , Meng Liu , Xuanjing Li , Lirong Wu , Jishui Wang , Tingjun Hou , Stan Z. Li

With the deployment of Large Language Models (LLMs) in interactive applications, online malicious intent detection has become increasingly critical. However, existing approaches fall short of handling diverse and complex user queries in…

It has been recognized that the data generated by the denoising diffusion probabilistic model (DDPM) improves adversarial training. After two years of rapid development in diffusion models, a question naturally arises: can better diffusion…

Computer Vision and Pattern Recognition · Computer Science 2023-06-02 Zekai Wang , Tianyu Pang , Chao Du , Min Lin , Weiwei Liu , Shuicheng Yan

Reward finetuning has emerged as a promising approach to aligning foundation models with downstream objectives. Remarkable success has been achieved in the language domain by using reinforcement learning (RL) to maximize rewards that…

Machine Learning · Computer Science 2024-03-29 Fei Deng , Qifei Wang , Wei Wei , Matthias Grundmann , Tingbo Hou

Inverse protein folding generates valid amino acid sequences that can fold into a desired protein structure, with recent deep-learning advances showing strong potential and competitive performance. However, challenges remain, such as…

Biomolecules · Quantitative Biology 2025-07-29 Peizhen Bai , Filip Miljković , Xianyuan Liu , Leonardo De Maria , Rebecca Croasdale-Wood , Owen Rackham , Haiping Lu

We explore the methodology and theory of reward-directed generation via conditional diffusion models. Directed generation aims to generate samples with desired properties as measured by a reward function, which has broad applications in…

Machine Learning · Computer Science 2023-07-17 Hui Yuan , Kaixuan Huang , Chengzhuo Ni , Minshuo Chen , Mengdi Wang

Structure-based drug design (SBDD) aims to generate 3D ligand molecules that bind to specific protein targets. Existing 3D deep generative models including diffusion models have shown great promise for SBDD. However, it is complex to…

Biomolecules · Quantitative Biology 2024-03-01 Zhilin Huang , Ling Yang , Zaixi Zhang , Xiangxin Zhou , Yu Bao , Xiawu Zheng , Yuwei Yang , Yu Wang , Wenming Yang

Deep neural networks are known to be vulnerable to security risks due to the inherent transferable nature of adversarial examples. Despite the success of recent generative model-based attacks demonstrating strong transferability, it still…

Computer Vision and Pattern Recognition · Computer Science 2024-07-31 Hunmin Yang , Jongoh Jeong , Kuk-Jin Yoon

We present Farm3D, a method for learning category-specific 3D reconstructors for articulated objects, relying solely on "free" virtual supervision from a pre-trained 2D diffusion-based image generator. Recent approaches can learn a…

Computer Vision and Pattern Recognition · Computer Science 2024-05-15 Tomas Jakab , Ruining Li , Shangzhe Wu , Christian Rupprecht , Andrea Vedaldi

Diffusion models have emerged as a powerful paradigm for modern generative modeling, demonstrating strong potential for large language models (LLMs). Unlike conventional autoregressive (AR) models that generate tokens sequentially,…

Machine Learning · Computer Science 2026-01-09 Gen Li , Changxiao Cai

Many inference-time language-model pipelines combine a cheap reward signal with an expensive verifier, such as exact answer checking in mathematical reasoning or hidden-test execution in code generation. We formalize this setting using a…

Machine Learning · Computer Science 2026-05-19 Shaddin Dughmi , Mahdi Haghifam , Yusuf Hakan Kalayci

Direct Preference Optimization (DPO) has shown promising results in aligning generative outputs with human preferences by distinguishing between chosen and rejected samples. However, a critical limitation of DPO is likelihood displacement,…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Ruojun Xu , Yu Kai , Xuhua Ren , Jiaxiang Cheng , Bing Ma , Tianxiang Zheng , Qinhlin Lu

Designing regulatory DNA elements with precise cell-type-specific activity is broadly relevant for cell engineering and gene therapy. Deep generative models can generate functional gene-regulatory elements, but existing methods struggle to…

Genomics · Quantitative Biology 2026-04-23 Animesh Awasthi , Raphael Bednarsky , Moritz Schaefer , Christoph Bock

Controllable diffusion generation often relies on various heuristics that are seemingly disconnected without a unified understanding. We bridge this gap with Diffusion Controller (DiffCon), a unified control-theoretic view that casts…

Machine Learning · Computer Science 2026-03-10 Tong Yang , Moonkyung Ryu , Chih-Wei Hsu , Guy Tennenholtz , Yuejie Chi , Craig Boutilier , Bo Dai

Legged locomotion demands controllers that are both robust and adaptable, while remaining compatible with task and safety considerations. However, model-free reinforcement learning (RL) methods often yield a fixed policy that can be…

Robotics · Computer Science 2025-10-07 Runhan Huang , Haldun Balim , Heng Yang , Yilun Du

Diffusion models (DMs) have recently demonstrated remarkable generation capability. However, their training generally requires huge computational resources and large-scale datasets. To solve these, recent studies empower DMs with the…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Hao Fang , Xiaohang Sui , Hongyao Yu , Kuofeng Gao , Jiawei Kong , Sijin Yu , Bin Chen , Shu-Tao Xia