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Electroencephalography (EEG) is a vital tool to measure and record brain activity in neuroscience and clinical applications, yet its potential is constrained by signal heterogeneity, low signal-to-noise ratios, and limited labeled datasets.…

Machine Learning · Computer Science 2024-09-20 Enze Shi , Kui Zhao , Qilong Yuan , Jiaqi Wang , Huawen Hu , Sigang Yu , Shu Zhang

Biomedical entity linking maps textual mentions to concepts in structured knowledge bases such as UMLS or SNOMED CT. Most existing systems link each mention independently, using only the mention or its surrounding sentence. This ignores…

Computation and Language · Computer Science 2026-05-14 Adam Remaki , Xavier Tannier , Christel Gérardin

Recently, electroencephalography (EEG) signals have been actively incorporated to decode brain activity to visual or textual stimuli and achieve object recognition in multi-modal AI. Accordingly, endeavors have been focused on building…

Computer Vision and Pattern Recognition · Computer Science 2024-07-03 Xu Zheng , Ling Wang , Kanghao Chen , Yuanhuiyi Lyu , Jiazhou Zhou , Lin Wang

Although recent advances in scaling large language models (LLMs) have resulted in improvements on many NLP tasks, it remains unclear whether these models trained primarily with general web text are the right tool in highly specialized,…

Electroencephalogram (EEG) signals are pivotal in providing insights into spontaneous brain activity, highlighting their significant importance in neuroscience research. However, the exploration of versatile EEG models is constrained by…

Signal Processing · Electrical Eng. & Systems 2025-09-01 Tongtian Yue , Xuange Gao , Shuning Xue , Yepeng Tang , Longteng Guo , Jie Jiang , Jing Liu

We introduce Controller-Embedded Language Model Interactions (CELI), a framework that integrates control logic directly within language model (LM) prompts, facilitating complex, multi-stage task execution. CELI addresses limitations of…

Electroencephalography (EEG) provides a non-invasive way to observe brain activity in real time. Deep learning has enhanced EEG analysis, enabling meaningful pattern detection for clinical and research purposes. However, most existing…

Artificial Intelligence · Computer Science 2025-07-03 Rabindra Khadka , Pedro G Lind , Anis Yazidi , Asma Belhadi

Electroencephalography (EEG) analysis stands at the forefront of neuroscience and artificial intelligence research, where foundation models are reshaping the traditional EEG analysis paradigm by leveraging their powerful representational…

Human-Computer Interaction · Computer Science 2025-08-25 Hongqi Li , Yitong Chen , Yujuan Wang , Weihang Ni , Haodong Zhang

Feature engineering for Electronic Health Records (EHR) is complicated by irregular observation intervals, variable measurement frequencies, and structural sparsity inherent to clinical time series. Existing automated methods either lack…

Machine Learning · Computer Science 2026-04-27 Hojjat Karami , David Atienza , Jean-Philippe Thiran , Anisoara Ionescu

Large Language Models have advanced clinical text classification, but their opaque predictions remain a critical barrier to practical adoption in research and clinical settings where investigators and physicians need to understand which…

Computation and Language · Computer Science 2025-11-18 Karthikeyan K , Raghuveer Thirukovalluru , David Carlson

The complexity and heterogeneity of data in many real-world applications pose significant challenges for traditional machine learning and signal processing techniques. For instance, in medicine, effective analysis of diverse physiological…

Machine Learning · Computer Science 2024-08-16 Nimeesha Chan , Felix Parker , William Bennett , Tianyi Wu , Mung Yao Jia , James Fackler , Kimia Ghobadi

Automatically generated radiology reports often receive high scores from existing evaluation metrics but fail to earn clinicians' trust. This gap reveals fundamental flaws in how current metrics assess the quality of generated reports. We…

Computation and Language · Computer Science 2025-10-02 Ruochen Li , Jun Li , Bailiang Jian , Kun Yuan , Youxiang Zhu

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

Analyzing vast textual data and summarizing key information from electronic health records imposes a substantial burden on how clinicians allocate their time. Although large language models (LLMs) have shown promise in natural language…

Recent advances in large language models (LLMs) have made significant progress across multiple biomedical tasks, including biomedical question answering, lay-language summarization of the biomedical literature, and clinical note…

Information Retrieval · Computer Science 2026-03-24 Deepak Gupta , Dina Demner-Fushman , William Hersh , Steven Bedrick , Kirk Roberts

Mental health disorders affect a significant portion of the global population, with diagnoses primarily conducted through Mental State Examinations (MSEs). MSEs serve as structured assessments to evaluate behavioral and cognitive…

Computation and Language · Computer Science 2025-12-12 Nilesh Kumar Sahu , Manjeet Yadav , Mudita Chaturvedi , Snehil Gupta , Haroon R Lone

Motivation: Patient-generated text contains critical information about patients' lived experiences, social circumstances, and engagement in care, including factors that strongly influence adherence, care coordination, and health equity.…

Computation and Language · Computer Science 2026-03-09 Samah Fodeh , Linhai Ma , Ganesh Puthiaraju , Srivani Talakokkul , Afshan Khan , Ashley Hagaman , Sarah Lowe , Aimee Roundtree

Despite recent advances in understanding and leveraging long-range conversational memory, existing benchmarks still lack systematic evaluation of large language models(LLMs) across diverse memory dimensions, particularly in multi-session…

Computation and Language · Computer Science 2026-01-08 Ye Shen , Dun Pei , Yiqiu Guo , Junying Wang , Yijin Guo , Zicheng Zhang , Qi Jia , Jun Zhou , Guangtao Zhai

Reliable epidemiological reasoning requires synthesizing study evidence to infer disease burden, transmission dynamics, and intervention effects at the population level. Existing medical question answering benchmarks primarily emphasize…

Computation and Language · Computer Science 2026-05-27 Mingyang Wei , Dehai Min , Zewen Liu , Yuzhang Xie , Guanchen Wu , Ziyang Zhang , Carl Yang , Max S. Y. Lau , Qi He , Lu Cheng , Wei Jin

As two important textual modalities in electronic health records (EHR), both structured data (clinical codes) and unstructured data (clinical narratives) have recently been increasingly applied to the healthcare domain. Most existing…

Computation and Language · Computer Science 2022-11-01 Sicen Liu , Xiaolong Wang , Yongshuai Hou , Ge Li , Hui Wang , Hui Xu , Yang Xiang , Buzhou Tang