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Fluorescence microscopy is essential to study biological structures and dynamics. However, existing systems suffer from a tradeoff between field-of-view (FOV), resolution, and complexity, and thus cannot fulfill the emerging need of…

Optics · Physics 2022-09-09 Yujia Xue , Qianwan Yang , Guorong Hu , Kehan Guo , Lei Tian

Signal sampling and reconstruction is a fundamental engineering task at the heart of signal processing. The celebrated Shannon-Nyquist theorem guarantees perfect signal reconstruction from uniform samples, obtained at a rate twice the…

Signal Processing · Electrical Eng. & Systems 2020-02-19 Charilaos I. Kanatsoulis , Xiao Fu , Nicholas D. Sidiropoulos , Mehmet Akçakaya

We combine confocal imaging, microfluidics and image analysis to record 3D-images of cells in flow. This enables us to recover the full 3D representation of several hundred living cells per minute. Whereas 3D confocal imaging has thus far…

Fluid Dynamics · Physics 2017-09-19 S. Quint , A. F. Christ , A. Guckenberger , S. Himbert , L. Kaestner , S. Gekle , C. Wagner

We present Defocusing Microscopy (DM), a bright-field optical microscopy technique able to perform total 3D imaging of transparent objects. By total 3D imaging we mean the determination of the actual shapes of the upper and lower surfaces…

Biological Physics · Physics 2015-06-19 P. M. S. Roma , L. Siman , F. T. Amaral , U. Agero , O. N. Mesquita

Radio-frequency (RF) tomographic imaging is a promising technique for inferring multi-dimensional physical space by processing RF signals traversed across a region of interest. However, conventional RF tomography schemes are generally based…

Information Theory · Computer Science 2017-12-19 Tao Deng , Xiao-Yang Liu , Feng Qian , Anwar Walid

In this paper, we propose a new model to segment cells in phase contrast microscopy images. Cell images collected from the similar scenario share a similar background. Inspired by this, we separate cells from the background in images by…

Computer Vision and Pattern Recognition · Computer Science 2019-04-02 Lin Zhang

The fully-connected tensor network (FCTN) decomposition has gained prominence in the field of tensor completion owing to its powerful capacity to capture the low-rank characteristics of tensors. Nevertheless, the recovery of local details…

Numerical Analysis · Mathematics 2025-10-28 Wenchao Xie , Qingsong Wang , Chengcheng Yan , Zheng Peng

Volumetric rendering of Computed Tomography (CT) scans is crucial for visualizing complex 3D anatomical structures in medical imaging. Current high-fidelity approaches, especially neural rendering techniques, require time-consuming…

Computer Vision and Pattern Recognition · Computer Science 2025-05-26 Zhongpai Gao , Meng Zheng , Benjamin Planche , Anwesa Choudhuri , Terrence Chen , Ziyan Wu

Tensor sparse modeling as a promising approach, in the whole of science and engineering has been a huge success. As is known to all, various data in practical application are often generated by multiple factors, so the use of tensors to…

Computer Vision and Pattern Recognition · Computer Science 2022-07-12 Hongbing Zhang , Xinyi Liu , Hongtao Fan , Yajing Li , Yinlin Ye

Electron microscopy (EM) images exhibit anisotropic axial resolution due to the characteristics inherent to the imaging modality, presenting challenges in analysis and downstream tasks.In this paper, we propose a diffusion-model-based…

Computer Vision and Pattern Recognition · Computer Science 2023-08-04 Kyungryun Lee , Won-Ki Jeong

Fluorescence microscopy has become a widely used tool for studying various biological structures of in vivo tissue or cells. However, quantitative analysis of these biological structures remains a challenge due to their complexity which is…

Computer Vision and Pattern Recognition · Computer Science 2019-04-16 Soonam Lee , Chichen Fu , Paul Salama , Kenneth W. Dunn , Edward J. Delp

This paper proposes a general framework to use the cross tensor approximation or tensor ColUmn-Row (CUR) approximation for reconstructing incomplete images and videos. The key importance of the new algorithms is their simplicity and ease of…

Tensor completion refers to the task of estimating the missing data from an incomplete measurement or observation, which is a core problem frequently arising from the areas of big data analysis, computer vision, and network engineering. Due…

Machine Learning · Computer Science 2021-05-21 Chenjian Pan , Chen Ling , Hongjin He , Liqun Qi , Yanwei Xu

Light-field microscopy (LFM) enables rapid volumetric imaging through single-frame acquisition and fast 3D reconstruction algorithms. The high speed and low phototoxicity of LFM make it highly suitable for real-time 3D fluorescence imaging,…

Optics · Physics 2025-02-24 Bohan Qu , Zhouyu Jin , You Zhou , Bo Xiong , Xun Cao

In this paper, we study multi-dimensional image recovery. Recently, transform-based tensor nuclear norm minimization methods are considered to capture low-rank tensor structures to recover third-order tensors in multi-dimensional image…

Image and Video Processing · Electrical Eng. & Systems 2022-06-15 Yi-Si Luo , Xi-Le Zhao , Tai-Xiang Jiang , Yi Chang , Michael K. Ng , Chao Li

We have developed an automatic method for segmenting fluorescence lifetime (FLT) imaging microscopy (FLIM) images of cells inspired by a multi-resolution community detection (MCD) based network segmentation method. The image processing…

Medical Physics · Physics 2014-01-06 Dandan Hu , Pinaki Sarder , Peter Ronhovde , Sandra Orthaus , Samuel Achilefu , Zohar Nussinov

Convolutional neural networks (CNNs) have gained tremendous success in solving complex inverse problems. The aim of this work is to develop a novel CNN framework to reconstruct video sequence of dynamic live cells captured using a…

Computer Vision and Pattern Recognition · Computer Science 2020-10-29 Thanh Nguyen , Yujia Xue , Yunzhe Li , Lei Tian , George Nehmetallah

Tensor decomposition is a popular technique for tensor completion, However most of the existing methods are based on linear or shallow model, when the data tensor becomes large and the observation data is very small, it is prone to over…

Numerical Analysis · Mathematics 2021-05-21 Qianxi Wu , An-Bao Xu

Volumetric biological imaging often involves compromising high temporal resolution at the expense of high spatial resolution when popular scanning methods are used to capture 3D information. We introduce an integrated experimental and image…

Recent advances in optical technology have significantly enhanced the resolution of imaging of living cells, achieving nanometer-scale precision. However, the crowded three-dimensional environment within cells presents a challenge for…

Optics · Physics 2024-11-20 Vahid Nasirimarekani , Zuzana Ditte , Eberhard Bodenschatz