Related papers: FASTR: Reimagining FASTQ via Compact Image-inspire…
The emerging semantic compression has been receiving increasing research efforts most recently, capable of achieving high fidelity restoration during compression, even at extremely low bitrates. However, existing semantic compression…
High-energy, large-scale particle colliders in nuclear and high-energy physics generate data at extraordinary rates, reaching up to $1$ terabyte and several petabytes per second, respectively. The development of real-time, high-throughput…
Motivation The Burrows-Wheeler transform (BWT) is the foundation of many algorithms for compression and indexing of text data, but the cost of computing the BWT of very large string collections has prevented these techniques from being…
Efficient lossless compression is essential for minimizing storage costs and transmission overhead while preserving data integrity. Traditional compression techniques, such as dictionary-based and statistical methods, often struggle to…
The rapid growth of scientific data is surpassing advancements in computing, creating challenges in storage, transfer, and analysis, particularly at the exascale. While data reduction techniques such as lossless and lossy compression help…
This paper demonstrates the utility of organized numerical representations of genes in research involving flat string gene formats (i.e., FASTA/FASTQ5). FASTA/FASTQ files have several current limitations, such as their large file sizes,…
Recently, significant accuracy improvement has been achieved for acoustic recognition systems by increasing the model size of Long Short-Term Memory (LSTM) networks. Unfortunately, the ever-increasing size of LSTM model leads to inefficient…
As the demand for privacy-preserving computation continues to grow, fully homomorphic encryption (FHE)-which enables continuous computation on encrypted data-has become a critical solution. However, its adoption is hindered by significant…
As high-throughput sequencers become standard equipment outside of sequencing centers, there is an increasing need for efficient methods for pre-processing and primary analysis. While a vast literature proposes methods for HTS data…
Storage systems often rely on multiple copies of the same compressed data, enabling recovery in case of binary data errors, of course, at the expense of a higher storage cost. In this paper we show that a wiser method of duplication entails…
In scientific fields such as quantum computing, physics, chemistry, and machine learning, high dimensional data are typically represented using sparse tensors. Tensor contraction is a popular operation on tensors to exploit meaning or alter…
There has been a growing interest in wideband spectrum sensing due to its applications in cognitive radios and electronic surveillance. To overcome the sampling rate bottleneck for wideband spectrum sensing, in this paper, we study the…
Although Multimodal Large Language Models (MLLMs) have demonstrated remarkable capabilities in vision, language, and video understanding tasks, scaling them to long-form speech remains a critical bottleneck due to the explosive growth of…
Image compression under ultra-low bitrates remains challenging for both conventional learned image compression (LIC) and generative vector-quantized (VQ) modeling. Conventional LIC suffers from severe artifacts due to heavy quantization,…
Quantum state tomography (QST) is a fundamental task in quantum information science that aims to reconstruct unknown quantum states from measurement data. However, the exponential growth of Hilbert-space dimension with system size makes…
Zero-shot quantization (ZSQ) is promising for compressing and accelerating deep neural networks when the data for training full-precision models are inaccessible. In ZSQ, network quantization is performed using synthetic samples, thus, the…
Adapting pretrained models typically involves a trade-off between the high training costs of backpropagation and the heavy inference overhead of memory-based or in-context learning. We propose FAAST, a forward-only associative adaptation…
Quantum state tomography (QST) is a crucial tool for characterizing quantum states. However, QST becomes impractical for reconstructing multi-qubit density matrices since data sets and computational costs grow exponentially with qubit…
Motivation: Second generation sequencing technology makes it feasible for many researches to obtain enough sequence reads to attempt the de novo assembly of higher eukaryotes (including mammals). De novo assembly not only provides a tool…
We present Hecate, a modular lossless genomic compression framework. It is designed around uncommon but practical source-coding choices. Unlike many single-method compressors, Hecate treats compression as a conditional coding problem over…