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Genetic regulation is a key component in development, but a clear understanding of the structure and dynamics of genetic networks is not yet at hand. In this work we investigate these properties within an artificial genome model originally…

Molecular Networks · Quantitative Biology 2008-05-01 Thimo Rohlf , Chris Winkler

The application of genetic algorithms (GAs) to many optimization problems in organizations often results in good performance and high quality solutions. For successful and efficient use of GAs, it is not enough to simply apply simple GAs…

Neural and Evolutionary Computing · Computer Science 2008-12-18 Maroun Bercachi , Philippe Collard , Manuel Clergue , Sébastien Verel

Neural Cellular Automata (NCAs) offer a way to study the growth of two-dimensional artificial organisms from a single seed cell. From the outset, NCA-grown organisms have had issues with stability, their natural boundary often breaking down…

Neural and Evolutionary Computing · Computer Science 2025-12-11 James Stovold

Complex evolving systems such as the biosphere, ecosystems and societies exhibit sudden collapses, for reasons that are only partially understood. Here we study this phenomenon using a mathematical model of a system that evolves under…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Ravi Mehrotra , Vikram Soni , Sanjay Jain

The evolution of cooperation often depends upon population structure, yet nearly all models of cooperation implicitly assume that this structure remains static. This is a simplifying assumption, because most organisms possess genetic traits…

Populations and Evolution · Quantitative Biology 2012-08-03 Simon T. Powers , Alexandra S. Penn , Richard A. Watson

The mutual influence of dynamics and structure is a central issue in complex systems. In this paper we study by simulation slow evolution of network under the feedback of a local-majority-rule opinion process. If performance-enhancing local…

Physics and Society · Physics 2009-11-13 Zhen Shao , Haijun Zhou

Living organisms process information to interact and adapt to their changing environment with the goal of finding food, mates or averting hazards. The structure of their niche has profound repercussions by both selecting their internal…

Physics and Society · Physics 2017-06-07 Hannes Hornischer , Stephan Herminghaus , Marco G. Mazza

Self-organization is the generation of order out of local interactions in non-equilibrium [1]. It is deeply connected to all fields of science from physics, chemistry to biology where functional living structures self-assemble[2] and…

Soft Condensed Matter · Physics 2018-10-24 Utsab Khadka , Viktor Holubec , Haw Yang , Frank Cichos

A dynamical systems scenario for developmental cell biology is proposed, based on numerical studies of a system with interacting units with internal dynamics and reproduction. Diversification, formation of discrete and recursive types, and…

chao-dyn · Physics 2009-10-31 Kunihiko Kaneko , Chikara Furusawa

Dawkins' replicator-based conception of evolution has led to widespread mis-application selectionism across the social sciences because it does not address the paradox that inspired the theory of natural selection in the first place: how do…

Populations and Evolution · Quantitative Biology 2019-07-02 Liane Gabora

Background: Acceleration of adaptation dynamics by stress-induced hypermutation has been found experimentally. Evolved evolvability is a prominent explanation. We investigate a more generally applicable explanation by a physical constraint.…

Biological Physics · Physics 2011-04-12 Lennart Hilbert

The equations of evolutionary change by natural selection are commonly expressed in statistical terms. Fisher's fundamental theorem emphasizes the variance in fitness. Quantitative genetics expresses selection with covariances and…

Populations and Evolution · Quantitative Biology 2012-11-20 Steven A. Frank

We investigate the self-organising behaviour of Digital Ecosystems, because a primary motivation for our research is to exploit the self-organising properties of biological ecosystems. We extended a definition for the complexity, grounded…

Neural and Evolutionary Computing · Computer Science 2012-01-25 Gerard Briscoe , Philippe De Wilde

The search for universal laws that help establish a relationship between dynamics and computation is driven by recent expansionist initiatives in biologically inspired computing. A general setting to understand both such dynamics and…

Machine Learning · Computer Science 2020-09-17 G Manjunath

Mobility causes network structures to change. In PSNs where underlying network structure is changing rapidly, we are interested in studying how information dissemination can be enhanced in a sparse disconnected network where nodes lack the…

Networking and Internet Architecture · Computer Science 2012-10-22 Rachit Agarwal , Vincent Gauthier , Monique Becker

The pace of progress in the fields of Evolutionary Computation and Machine Learning is currently limited -- in the former field, by the improbability of making advantageous extensions to evolutionary algorithms when their capacity for…

Neural and Evolutionary Computing · Computer Science 2009-04-03 Keki Burjorjee

We develop a new randomized iterative algorithm---stochastic dual ascent (SDA)---for finding the projection of a given vector onto the solution space of a linear system. The method is dual in nature: with the dual being a non-strongly…

Numerical Analysis · Mathematics 2016-01-29 Robert Mansel Gower , Peter Richtarik

Diffusion models have achieved remarkable success in generative tasks but suffer from high computational costs due to their iterative sampling process and quadratic attention costs. Existing training-free acceleration strategies that reduce…

Machine Learning · Computer Science 2025-07-24 Ting Jiang , Yixiao Wang , Hancheng Ye , Zishan Shao , Jingwei Sun , Jingyang Zhang , Zekai Chen , Jianyi Zhang , Yiran Chen , Hai Li

Life uses non-equilibrium mechanisms to create ordered structures not attainable at equilibrium; the resulting order is assumed to provide functional benefits that outweigh costs of time and energy needed by these mechanisms. Here, we show…

Populations and Evolution · Quantitative Biology 2025-01-07 Riccardo Ravasio , Kabir Husain , Constantine G. Evans , Rob Phillips , Marco Ribezzi , Jack W. Szostak , Arvind Murugan

Since the time of Darwin, scientists have struggled to reconcile the evolution of biological forms in a universe determined by fixed laws. These laws underpin the origin of life, evolution, human culture and technology, as set by the…