English
Related papers

Related papers: DeepMoLM: Leveraging Visual and Geometric Structur…

200 papers

Vision Language Models (VLMs) offer the exciting possibility of processing text as rendered images, bypassing the need for tokenizing the text into long token sequences. Since VLM image encoders map fixed-size images to a fixed number of…

Computer Vision and Pattern Recognition · Computer Science 2026-05-11 Roy Xie , Dan Friedman , Donghan Yu , Bowen Pan , Christopher Fifty , Jang-Hyun Kim , Xianzhi Du , Zhe Gan , Vivek Rathod , Bhuwan Dhingra

Several modeling domains make use of three-dimensional representations, e.g., the "ball-and-stick" models of molecules. Our generator framework DEViL3D supports the design and implementation of visual 3D languages for such modeling…

Programming Languages · Computer Science 2013-11-21 Jan Wolter

Molecular property prediction is a crucial foundation for drug discovery. In recent years, pre-trained deep learning models have been widely applied to this task. Some approaches that incorporate prior biological domain knowledge into the…

Machine Learning · Computer Science 2024-08-20 Tianyu Zhang , Yuxiang Ren , Chengbin Hou , Hairong Lv , Xuegong Zhang

Vision-language models (VLMs) excel in visual understanding but often lack reliable grounding capabilities and actionable inference rates. Integrating them with open-vocabulary object detection (OVD), instance segmentation, and tracking…

Computer Vision and Pattern Recognition · Computer Science 2025-10-21 Bastian Pätzold , Jan Nogga , Sven Behnke

Molecule pretraining has quickly become the go-to schema to boost the performance of AI-based drug discovery. Naturally, molecules can be represented as 2D topological graphs or 3D geometric point clouds. Although most existing pertaining…

Machine Learning · Computer Science 2025-02-10 Shengchao Liu , Weitao Du , Zhiming Ma , Hongyu Guo , Jian Tang

Large language models (LLMs) are increasingly recognized as powerful tools for scientific discovery, particularly in molecular science. A fundamental requirement for these models is the ability to accurately understand molecular structures,…

Machine Learning · Computer Science 2025-05-23 Yunhui Jang , Jaehyung Kim , Sungsoo Ahn

Deep learning models have become fundamental tools in drug design. In particular, large language models trained on biochemical sequences learn feature vectors that guide drug discovery through virtual screening. However, such models do not…

Biomolecules · Quantitative Biology 2025-03-28 Joseph D. Clark , Tanner J. Dean , Diwakar Shukla

Modern multimodal large language models (MLLMs) typically keep the language model fixed and train a visual projector that maps the pixels into a sequence of tokens in its embedding space, so that images can be presented in essentially the…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Hyun Lee , Hyemin Jeong , Yejin Kim , Hyungwook Choi , Hyunsoo Cho , Soo Kyung Kim , Joonseok Lee

Large language models (LLMs) have demonstrated significant capabilities in mathematical reasoning, particularly with text-based mathematical problems. However, current multi-modal large language models (MLLMs), especially those specialized…

Computation and Language · Computer Science 2024-12-03 Zhen Yang , Jinhao Chen , Zhengxiao Du , Wenmeng Yu , Weihan Wang , Wenyi Hong , Zhihuan Jiang , Bin Xu , Jie Tang

Generative models, especially diffusion models (DMs), have achieved promising results for generating feature-rich geometries and advancing foundational science problems such as molecule design. Inspired by the recent huge success of Stable…

Machine Learning · Computer Science 2023-05-03 Minkai Xu , Alexander Powers , Ron Dror , Stefano Ermon , Jure Leskovec

Recent Multi-Modal Large Language Models (MLLMs) have demonstrated strong capabilities in learning joint representations from text and images. However, their spatial reasoning remains limited. We introduce 3DFroMLLM, a novel framework that…

Computer Vision and Pattern Recognition · Computer Science 2025-08-13 Noor Ahmed , Cameron Braunstein , Steffen Eger , Eddy Ilg

Large Vision-Language Models (LVLMs) have demonstrated strong multimodal reasoning capabilities on long and complex documents. However, their high memory footprint makes them impractical for deployment on resource-constrained edge devices.…

Computer Vision and Pattern Recognition · Computer Science 2025-11-24 Tanveer Hannan , Dimitrios Mallios , Parth Pathak , Faegheh Sardari , Thomas Seidl , Gedas Bertasius , Mohsen Fayyaz , Sunando Sengupta

Multimodal molecular representation learning, which jointly models molecular graphs and their textual descriptions, enhances predictive accuracy and interpretability by enabling more robust and reliable predictions of drug toxicity,…

Machine Learning · Computer Science 2025-10-21 Yingxu Wang , Kunyu Zhang , Jiaxin Huang , Nan Yin , Siwei Liu , Eran Segal

Large Vision-Language Models (LVLMs) have shown impressive capabilities across a range of tasks that integrate visual and textual understanding, such as image captioning and visual question answering. These models are trained on large-scale…

Computer Vision and Pattern Recognition · Computer Science 2026-03-11 Xiaomei Zhang , Hanyu Zheng , Xiangyu Zhu , Jinghuan Wei , Junhong Zou , Zhen Lei , Zhaoxiang Zhang

Do we still need to represent objects explicitly in multimodal large language models (MLLMs)? To one extreme, pre-trained encoders convert images into visual tokens, with which objects and spatiotemporal relationships may be implicitly…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Zitian Tang , Shijie Wang , Junho Cho , Jaewook Yoo , Chen Sun

Post-hoc explanation methods have often been criticised for abstracting away the decision-making process of deep neural networks. In this work, we would like to provide natural language descriptions for what different layers of a vision…

Computer Vision and Pattern Recognition · Computer Science 2023-09-06 Meghal Dani , Isabel Rio-Torto , Stephan Alaniz , Zeynep Akata

Over the past few years, the advancement of Multimodal Large Language Models (MLLMs) has captured the wide interest of researchers, leading to numerous innovations to enhance MLLMs' comprehension. In this paper, we present AdaptVision, a…

Computer Vision and Pattern Recognition · Computer Science 2024-09-02 Yonghui Wang , Wengang Zhou , Hao Feng , Houqiang Li

Reading dense text and locating objects within images are fundamental abilities for Large Vision-Language Models (LVLMs) tasked with advanced jobs. Previous LVLMs, including superior proprietary models like GPT-4o, have struggled to excel…

Computer Vision and Pattern Recognition · Computer Science 2024-10-08 Ya-Qi Yu , Minghui Liao , Jiwen Zhang , Jihao Wu

Multimodal Large Language Models (MLLMs) demonstrate a complex understanding of scenes, benefiting from large-scale and high-quality datasets. Most existing caption datasets lack the ground locations and relations for visual entities.…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Xiangtai Li , Tao Zhang , Yanwei Li , Haobo Yuan , Shihao Chen , Yikang Zhou , Jiahao Meng , Yueyi Sun , Shilin Xu , Lu Qi , Tianheng Cheng , Yi Lin , Zilong Huang , Wenhao Huang , Jiashi Feng , Guang Shi

Accurate and efficient prediction of polymer properties is of key importance for polymer design. Traditional experimental tools and density function theory (DFT)-based simulations for polymer property evaluation, are both expensive and…

Materials Science · Physics 2024-10-08 Cong Shen , Yipeng Zhang , Fei Han , Kelin Xia